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IMGVR_UViG_3300014887_000143-3300014887-Ga0180302_100094374
Arc-VirIMGVR_UViG_3300014887_000143-3300014887-Ga0180302_100094374
Identity
- Kingdom:
- archaea
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 102-227
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ovrB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 33.0 | 3.93e-01 | 70.6% | 77.0% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.60 | 28.0 | 3.62e-01 | 77.0% | 77.5% |
| 1ji7A00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.58 | 32.0 | 3.94e-01 | 72.2% | 85.7% |
| 3frqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 39.0 | 3.43e-01 | 70.6% | 84.2% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 41.0 | 3.34e-01 | 79.4% | 87.3% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 38.0 | 3.63e-01 | 73.8% | 93.1% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 24.0 | 3.24e-01 | 76.2% | 84.6% |
| 2do9A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 29.0 | 3.37e-01 | 74.6% | 78.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 29.0 | 3.66e-01 | 81.0% | 100.0% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 32.0 | 3.14e-01 | 97.6% | 54.5% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 31.0 | 3.63e-01 | 71.4% | 97.3% |
| 3buxB01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.51 | 31.0 | 3.15e-01 | 96.0% | 58.1% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 29.0 | 3.52e-01 | 92.1% | 95.8% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.50 | 33.0 | 3.49e-01 | 91.3% | 74.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986874 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.65 | 60.0 | 3.69e-01 | 100.0% | 20.9% |
| 4385262 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.59 | 44.0 | 2.96e-01 | 77.8% | 68.3% |
| 3260673 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.52 | 38.0 | 3.23e-01 | 77.0% | 70.9% |
| 5000884 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.50 | 39.0 | 3.17e-01 | 82.5% | 67.9% |
D2
medium
residues 332-415
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.69 | 47.0 | 4.27e-01 | 70.2% | 79.6% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 43.0 | 4.16e-01 | 70.2% | 95.9% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.62 | 39.0 | 4.12e-01 | 71.4% | 71.6% |
| 1lshA02 | 1.25.10.20 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical | 0.59 | 51.0 | 3.50e-01 | 100.0% | 34.9% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.57 | 43.0 | 3.63e-01 | 83.3% | 77.4% |
| 1ux8A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 48.0 | 4.29e-01 | 100.0% | 66.9% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.54 | 37.0 | 3.56e-01 | 71.4% | 83.0% |
| 3qc1A01 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.54 | 47.0 | 3.93e-01 | 98.8% | 91.4% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.54 | 45.0 | 3.80e-01 | 96.4% | 91.6% |
| 3wicA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 3.35e-01 | 100.0% | 41.0% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.52 | 38.0 | 3.93e-01 | 85.7% | 82.1% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 41.0 | 3.41e-01 | 90.5% | 92.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3421659 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 56.0 | 4.20e-01 | 100.0% | 60.5% |
| 3227238 | 109.4.1.469 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS15 | 0.60 | 51.0 | 3.39e-01 | 96.4% | 47.7% |
| 3169534 | 109.4.1.2072 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29151 | 0.58 | 46.0 | 2.83e-01 | 89.3% | 23.9% |
| 3284180 | 109.3.1.160 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › EccD | 0.58 | 46.0 | 3.91e-01 | 89.3% | 76.7% |
| 3864648 | 5000.6.1.0 ↗ | alpha arrays › Toxins' membrane translocation domains › Tethering factor for nuclear proteasome cut8 › Tethering factor for nuclear proteasome cut8 | 0.57 | 46.0 | 4.02e-01 | 92.9% | 82.9% |
| 3665129 | 109.4.1.123 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6 | 0.55 | 45.0 | 3.64e-01 | 89.3% | 96.2% |
| 3276124 | 109.4.1.2186 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17, TPR_16 | 0.53 | 41.0 | 2.75e-01 | 86.9% | 35.4% |
| 3270407 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.51 | 46.0 | 3.08e-01 | 100.0% | 42.5% |