Back to structures

IMGVR_UViG_3300014887_000143-3300014887-Ga0180302_100094375

Arc-Vir

IMGVR_UViG_3300014887_000143-3300014887-Ga0180302_100094375

Quality

60.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-136
PDB
D2 high residues 164-257
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 37.0 4.40e-01 89.4% 75.8%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.64 46.0 3.86e-01 75.5% 83.2%
1dpjA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 41.0 3.51e-01 71.3% 82.5%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 4.57e-01 85.1% 91.4%
2y8nB02 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 27.0 3.46e-01 89.4% 86.4%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.57 39.0 4.22e-01 70.2% 94.9%
7tbdB02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 39.0 3.31e-01 73.4% 76.7%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.56 31.0 3.75e-01 96.8% 87.7%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 30.0 3.63e-01 73.4% 86.0%
8cvmg01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 38.0 4.24e-01 72.3% 98.6%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 25.0 2.99e-01 93.6% 59.7%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 4.11e-01 98.9% 95.5%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 37.0 3.91e-01 70.2% 91.4%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 37.0 3.83e-01 70.2% 89.4%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 36.0 3.76e-01 70.2% 90.6%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.86e-01 88.3% 84.8%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 25.0 2.85e-01 96.8% 55.6%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.64e-01 97.9% 61.3%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 36.0 3.78e-01 73.4% 91.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010990 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.67 40.0 4.41e-01 100.0% 74.7%
3522295 1.1.1.2 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp,A1_Propeptide 0.63 46.0 3.00e-01 75.5% 77.4%
3469969 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.62 43.0 2.89e-01 72.3% 79.5%
3184113 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.60 43.0 4.22e-01 73.4% 91.0%
5028546 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 28.0 3.27e-01 74.5% 64.3%
3395122 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 27.0 3.54e-01 91.5% 84.0%
4046039 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 40.0 4.22e-01 73.4% 91.8%
3720521 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 38.0 3.89e-01 70.2% 95.8%
4887702 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 40.0 3.92e-01 74.5% 94.1%
3688824 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.56 38.0 3.87e-01 71.3% 93.7%
4088600 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 39.0 4.04e-01 72.3% 91.8%
2641778 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.55 38.0 4.07e-01 72.3% 93.9%
4599942 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.55 39.0 4.18e-01 73.4% 91.3%
3838921 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.55 39.0 4.16e-01 73.4% 91.3%
4444512 394.1.1.2 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 0.54 24.0 3.36e-01 90.4% 86.7%
4889389 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 38.0 3.92e-01 73.4% 86.5%
3785596 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.54 42.0 3.54e-01 84.0% 87.9%
3451427 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 38.0 4.08e-01 72.3% 91.3%
3598272 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.78e-01 86.2% 85.8%
4197245 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 37.0 4.01e-01 72.3% 90.0%
3887129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.92e-01 98.9% 78.9%
3681410 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 34.0 3.43e-01 100.0% 65.3%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.52 40.0 3.64e-01 97.9% 61.3%
3739717 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 35.0 3.68e-01 71.3% 90.6%
3417076 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 23.0 3.09e-01 88.3% 84.4%
3648091 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.51 46.0 3.96e-01 100.0% 84.0%
3681742 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.51 45.0 3.80e-01 100.0% 76.4%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.51 32.0 3.56e-01 81.9% 80.0%
3407188 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 23.0 2.97e-01 86.2% 72.7%
3231890 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.50 23.0 3.10e-01 88.3% 86.4%
4098275 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.50 35.0 3.76e-01 73.4% 92.5%
D3 high residues 264-385
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 4.99e-01 86.1% 82.3%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 4.78e-01 87.7% 76.2%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 44.0 4.79e-01 86.9% 77.7%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 43.0 4.14e-01 87.7% 55.9%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 39.0 4.82e-01 80.3% 93.2%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 38.0 4.51e-01 78.7% 80.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.73e-01 86.9% 79.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.48e-01 86.1% 69.6%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 39.0 4.81e-01 87.7% 97.3%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.20e-01 86.9% 60.4%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 36.0 4.23e-01 76.2% 78.6%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 37.0 4.03e-01 83.6% 68.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.19e-01 88.5% 64.2%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 4.31e-01 86.1% 78.2%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.36e-01 86.9% 75.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 40.0 4.01e-01 87.7% 64.3%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.79e-01 87.7% 54.2%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 45.0 4.65e-01 92.6% 83.3%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.93e-01 87.7% 60.6%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 44.0 4.76e-01 93.4% 94.2%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.54 29.0 3.68e-01 78.7% 90.1%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 36.0 3.35e-01 73.0% 84.5%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 32.0 3.47e-01 77.9% 77.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949577 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 49.0 5.47e-01 86.1% 83.2%
5036590 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 40.0 4.17e-01 77.9% 57.4%
5044327 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 47.0 5.15e-01 86.9% 81.0%
4982742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 39.0 5.16e-01 76.2% 100.0%
5018482 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 6.02e-01 83.6% 100.0%
4251909 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 43.0 5.00e-01 84.4% 88.2%
5050401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 4.89e-01 86.9% 79.0%
5053957 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 39.0 5.09e-01 77.0% 100.0%
4943641 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 39.0 4.83e-01 76.2% 89.3%
4229465 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 42.0 4.97e-01 81.1% 91.3%
4983310 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 45.0 4.93e-01 86.1% 82.0%
3505845 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.67 46.0 5.04e-01 87.7% 86.0%
4946524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 44.0 4.58e-01 86.9% 72.7%
4987122 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 37.0 4.73e-01 77.0% 100.0%
3737673 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.66 41.0 4.45e-01 88.5% 74.0%
4993816 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 41.0 3.81e-01 84.4% 49.3%
5051882 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.66 43.0 4.52e-01 86.9% 72.7%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.66 41.0 4.78e-01 82.8% 89.4%
4113237 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.65 43.0 4.82e-01 90.2% 86.3%
5011597 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.64 44.0 4.79e-01 91.0% 86.9%
3700237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.53e-01 86.1% 70.0%
4993483 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 46.0 4.89e-01 92.6% 86.7%
5049735 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.63 44.0 3.19e-01 88.5% 24.9%
3782906 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.63 40.0 4.16e-01 88.5% 70.0%
4669669 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 43.0 4.53e-01 91.0% 79.1%
3166551 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.62 48.0 4.90e-01 86.9% 83.3%
3782381 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.62 48.0 4.79e-01 86.9% 79.2%
5039869 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 38.0 3.83e-01 84.4% 60.8%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.04e-01 90.2% 60.7%
4992821 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.06e-01 86.9% 61.4%
4580140 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 37.0 4.26e-01 86.9% 84.7%
3200036 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.60 49.0 4.67e-01 86.1% 76.4%
4636267 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.57 36.0 3.37e-01 87.7% 48.1%
3421785 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 39.0 3.84e-01 84.4% 66.2%
4986010 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.04e-01 93.4% 71.2%
3439642 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.43e-01 96.7% 77.9%
3666427 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 50.0 4.60e-01 99.2% 93.5%
5064968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.69e-01 95.9% 87.7%
3602641 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.43e-01 85.2% 45.6%
3616787 206.1.2.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.52 39.0 3.03e-01 78.7% 78.2%
4024901 328.3.1.0 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.51 29.0 3.34e-01 77.9% 77.6%
5045522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 46.0 3.66e-01 99.2% 86.9%
4629526 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.51 44.0 3.26e-01 93.4% 63.9%