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IMGVR_UViG_3300014887_000159-3300014887-Ga0180302_100046541
Arc-VirIMGVR_UViG_3300014887_000159-3300014887-Ga0180302_100046541
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-129
Domain cluster:
rep: S20_GE20_scaffold_13766_prodigal-single.1__X__X__00154__D110-209_271-284
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.63 | 37.0 | 3.76e-01 | 75.6% | 57.5% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.59 | 44.0 | 3.15e-01 | 81.4% | 61.6% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.56 | 41.0 | 3.27e-01 | 79.1% | 84.4% |
| 1y8qB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 45.0 | 3.37e-01 | 91.9% | 93.7% |
| 6nrzA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 43.0 | 2.91e-01 | 89.5% | 70.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.65 | 55.0 | 3.72e-01 | 91.9% | 73.1% |
| 3422313 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.64 | 38.0 | 3.91e-01 | 76.7% | 61.3% |
| 3418844 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.52 | 42.0 | 2.97e-01 | 89.5% | 58.2% |
| 2966553 | 2005.1.1.31 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CDPS | 0.52 | 38.0 | 2.92e-01 | 79.1% | 78.1% |
| 3967750 | 3121.1.1.5 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_3 | 0.50 | 32.0 | 3.47e-01 | 95.3% | 78.6% |