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IMGVR_UViG_3300014887_000159-3300014887-Ga0180302_100046544

Arc-Vir

IMGVR_UViG_3300014887_000159-3300014887-Ga0180302_100046544

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 62.0 6.14e-01 89.6% 100.0%
3tejA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.76 60.0 3.64e-01 89.6% 19.4%
2yusA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 62.0 6.03e-01 100.0% 83.0%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 56.0 4.88e-01 85.4% 68.1%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 59.0 5.33e-01 100.0% 81.7%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.69e-01 85.4% 55.4%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 54.0 4.97e-01 100.0% 83.3%
1fexA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 59.0 5.58e-01 100.0% 89.8%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.67 55.0 5.00e-01 95.8% 88.2%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 52.0 4.71e-01 100.0% 81.1%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 5.34e-01 100.0% 93.6%
3kc2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 59.0 3.97e-01 100.0% 67.7%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 52.0 3.59e-01 95.8% 26.0%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.63 52.0 4.29e-01 100.0% 64.6%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 49.0 4.60e-01 97.9% 95.5%
8thmA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.60 47.0 4.13e-01 93.8% 61.3%
3smvA02 1.10.150.750 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 47.0 4.21e-01 97.9% 90.9%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 44.0 3.63e-01 89.6% 51.6%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.56 44.0 3.48e-01 100.0% 66.9%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 43.0 3.85e-01 93.8% 74.7%
2aeeB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 2.72e-01 83.3% 22.2%
3lpaA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 37.0 2.36e-01 83.3% 82.9%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.52 39.0 3.46e-01 83.3% 59.5%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3335282 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.95 78.0 7.44e-01 87.5% 100.0%
2393452 101.43.1.1 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.90 77.0 7.30e-01 91.7% 80.4%
3590835 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.90 69.0 7.14e-01 85.4% 88.9%
3657105 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 80.0 7.30e-01 95.8% 98.3%
3641442 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.88 82.0 6.17e-01 100.0% 58.1%
3590733 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.88 68.0 6.71e-01 85.4% 80.0%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.87 74.0 7.38e-01 93.8% 94.0%
3680460 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.87 79.0 6.58e-01 100.0% 76.2%
4979322 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.87 76.0 6.62e-01 95.8% 67.1%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.86 74.0 7.07e-01 93.8% 85.5%
3420021 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.86 79.0 5.68e-01 100.0% 48.8%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 75.0 6.93e-01 95.8% 83.3%
3730184 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.86 77.0 7.39e-01 100.0% 90.9%
3604531 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.85 75.0 5.53e-01 100.0% 38.4%
3960420 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.85 75.0 5.45e-01 97.9% 91.2%
3684956 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.85 76.0 6.83e-01 100.0% 76.9%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 77.0 7.39e-01 100.0% 96.4%
3442072 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.84 77.0 5.55e-01 100.0% 48.0%
3602874 4156.1.1.7 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.84 74.0 4.95e-01 97.9% 61.1%
5052263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 75.0 6.42e-01 100.0% 73.3%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 70.0 6.69e-01 93.8% 89.1%
3609939 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.83 74.0 5.69e-01 100.0% 46.7%
3962579 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 72.0 5.11e-01 97.9% 81.4%
4105352 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.82 69.0 4.24e-01 95.8% 16.4%
4190132 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 7.06e-01 97.9% 96.0%
5047162 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 69.0 6.31e-01 97.9% 70.8%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 6.34e-01 100.0% 70.0%
3189345 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 74.0 6.45e-01 100.0% 70.0%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 6.61e-01 100.0% 78.3%
3584413 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 69.0 6.24e-01 93.8% 78.5%
4958656 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.81 61.0 3.73e-01 85.4% 13.6%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 66.0 6.72e-01 91.7% 97.8%
3961039 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.81 65.0 6.65e-01 89.6% 95.6%
5027952 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 70.0 6.70e-01 97.9% 87.3%
3957333 101.43.1.2 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › Transposase_mut 0.81 66.0 6.22e-01 91.7% 75.9%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.80 67.0 6.31e-01 95.8% 78.3%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.80 69.0 6.27e-01 97.9% 73.8%
3621273 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.80 69.0 6.61e-01 95.8% 89.1%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 64.0 6.07e-01 93.8% 76.7%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.15e-01 91.7% 78.3%
3958338 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.80 64.0 6.61e-01 93.8% 97.8%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 71.0 6.23e-01 100.0% 91.4%
4959187 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.80 63.0 6.27e-01 95.8% 86.0%
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 69.0 5.99e-01 100.0% 64.0%
3603740 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 6.13e-01 100.0% 74.3%
3901880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 66.0 6.02e-01 100.0% 70.8%
3958809 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.79 67.0 6.35e-01 100.0% 81.0%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.79 65.0 6.48e-01 93.8% 98.0%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.79 64.0 5.88e-01 93.8% 69.2%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 69.0 6.25e-01 100.0% 75.4%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 5.88e-01 93.8% 69.2%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.78 64.0 5.87e-01 93.8% 69.2%
3191996 101.1.2.480 alpha arrays › HTH › HTH › winged helix domain › Clr5 0.78 67.0 6.48e-01 100.0% 90.9%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 68.0 6.18e-01 100.0% 73.8%
5077022 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 67.0 5.28e-01 97.9% 48.0%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 6.44e-01 100.0% 90.9%
3574709 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 69.0 6.45e-01 100.0% 88.3%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 5.58e-01 100.0% 83.5%
3960847 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.77 66.0 4.87e-01 100.0% 57.7%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 5.98e-01 95.8% 76.7%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 66.0 6.37e-01 100.0% 87.3%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.76 67.0 4.84e-01 100.0% 64.4%
3629477 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 6.25e-01 100.0% 80.0%
5029224 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 6.08e-01 97.9% 80.0%
5070907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 59.0 6.07e-01 97.9% 95.6%
5006610 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 64.0 6.03e-01 100.0% 78.3%
3988910 101.1.1.382 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.75 60.0 6.13e-01 89.6% 95.6%
3380070 101.43.1.3 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › PF26175 0.75 64.0 6.05e-01 100.0% 86.7%
3575777 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.75 65.0 6.51e-01 100.0% 96.0%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 66.0 6.31e-01 100.0% 89.1%
2627770 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.74 58.0 5.17e-01 85.4% 63.2%
3243611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 6.10e-01 95.8% 94.0%
3465761 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.73 61.0 4.45e-01 93.8% 35.4%
3793542 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 5.86e-01 100.0% 81.7%
3987150 101.1.1.382 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.73 61.0 6.07e-01 100.0% 94.0%
3417440 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 58.0 4.34e-01 100.0% 34.8%
3311830 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.69 58.0 4.26e-01 100.0% 35.6%
3739094 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 57.0 5.25e-01 100.0% 78.5%
2636505 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.67 55.0 4.97e-01 95.8% 87.0%
3422646 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.27e-01 100.0% 80.0%
3842875 101.1.1.66 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.61 49.0 4.03e-01 100.0% 67.6%
3588943 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.59 45.0 3.65e-01 95.8% 86.7%
D2 high residues 55-122
PDB
Domain cluster: representative
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.96 74.0 6.74e-01 79.4% 64.3%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.95 79.0 7.71e-01 89.7% 80.8%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.95 60.0 7.08e-01 75.0% 91.7%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.94 88.0 6.66e-01 100.0% 47.2%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.94 78.0 5.68e-01 86.8% 37.3%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.93 69.0 4.70e-01 76.5% 25.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.93 64.0 6.14e-01 73.5% 64.0%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.93 73.0 5.44e-01 86.8% 37.1%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.93 69.0 6.77e-01 77.9% 80.8%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.93 65.0 5.71e-01 72.1% 53.3%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.92 63.0 4.74e-01 73.5% 32.9%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.92 69.0 6.46e-01 77.9% 83.7%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.91 67.0 6.09e-01 79.4% 59.8%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.90 84.0 6.55e-01 100.0% 54.1%
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.90 70.0 5.02e-01 80.9% 32.2%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.90 70.0 6.99e-01 82.4% 79.7%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.89 70.0 5.50e-01 85.3% 43.1%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 81.0 5.72e-01 97.1% 37.1%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.89 73.0 5.67e-01 89.7% 43.4%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.89 71.0 5.27e-01 83.8% 71.8%
4ciuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.89 82.0 5.78e-01 100.0% 36.5%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 81.0 5.58e-01 100.0% 32.6%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.89 72.0 5.39e-01 85.3% 75.8%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 66.0 5.21e-01 92.6% 41.4%
4i1mB01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.88 70.0 5.54e-01 86.8% 44.2%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.88 70.0 5.98e-01 86.8% 55.9%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.88 80.0 6.79e-01 98.5% 65.1%
1cpqA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.88 63.0 5.00e-01 77.9% 39.5%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.88 69.0 7.03e-01 83.8% 85.1%
6tqfA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.88 80.0 4.88e-01 100.0% 17.4%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.88 83.0 7.05e-01 100.0% 66.0%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.88 73.0 5.50e-01 88.2% 40.5%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 68.0 6.68e-01 82.4% 80.8%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.87 61.0 5.66e-01 72.1% 59.8%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 79.0 5.24e-01 100.0% 27.8%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.87 65.0 6.81e-01 79.4% 85.5%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.87 67.0 4.86e-01 92.6% 32.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.86 63.0 5.61e-01 79.4% 55.9%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.86 60.0 4.94e-01 72.1% 43.4%
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.86 71.0 5.17e-01 88.2% 35.5%
2c2aA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.86 79.0 7.13e-01 100.0% 91.1%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.86 60.0 5.44e-01 72.1% 56.3%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.86 59.0 4.77e-01 72.1% 41.4%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.85 75.0 5.91e-01 100.0% 49.2%
4uskA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.85 61.0 4.53e-01 76.5% 32.5%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.85 72.0 5.46e-01 91.2% 42.3%
6umqA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.85 64.0 5.27e-01 79.4% 47.8%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.84 73.0 5.42e-01 92.6% 42.8%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.84 66.0 6.77e-01 82.4% 92.2%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.82 59.0 4.12e-01 77.9% 25.5%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 59.0 5.92e-01 75.0% 100.0%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.81 71.0 4.50e-01 97.1% 20.9%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.80 70.0 5.58e-01 92.6% 66.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.79 72.0 6.25e-01 100.0% 68.6%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.79 64.0 4.97e-01 92.6% 41.8%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 61.0 6.11e-01 82.4% 89.7%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.78 68.0 5.99e-01 95.6% 67.3%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.78 61.0 6.11e-01 85.3% 82.9%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.77 64.0 5.34e-01 89.7% 55.8%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 63.0 6.13e-01 94.1% 82.7%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 64.0 5.19e-01 100.0% 50.4%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.75 66.0 6.04e-01 100.0% 73.3%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 60.0 5.89e-01 97.1% 81.9%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.75 66.0 4.71e-01 100.0% 81.4%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.75 57.0 6.19e-01 89.7% 100.0%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.74 59.0 5.89e-01 88.2% 87.3%
4u72A01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 58.0 4.07e-01 86.8% 74.3%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 5.58e-01 91.2% 79.2%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 55.0 5.37e-01 94.1% 82.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3336677 605.1.1.132 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 0.99 88.0 8.49e-01 92.6% 84.0%
5031890 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.98 94.0 6.12e-01 100.0% 27.8%
3560750 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.98 87.0 8.62e-01 92.6% 90.0%
3425296 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.97 91.0 6.94e-01 97.1% 48.9%
3296414 192.29.1.168 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 0.97 87.0 8.59e-01 92.6% 90.0%
3944931 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.97 86.0 7.69e-01 92.6% 70.0%
3201680 192.17.1.1 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn 0.97 92.0 8.31e-01 100.0% 78.4%
4974450 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.96 92.0 6.50e-01 100.0% 46.9%
3960197 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.96 91.0 6.10e-01 100.0% 32.1%
3908626 3755.3.1.483 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30493 0.95 90.0 5.85e-01 100.0% 27.1%
3559003 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.95 89.0 7.65e-01 98.5% 79.0%
4930198 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.95 73.0 7.80e-01 80.9% 90.0%
4007316 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.95 90.0 6.63e-01 100.0% 43.9%
5005597 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.95 72.0 5.56e-01 82.4% 40.0%
4514051 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.94 90.0 7.30e-01 100.0% 62.6%
3738041 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.94 79.0 7.26e-01 88.2% 71.8%
3186698 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.94 79.0 7.44e-01 89.7% 75.0%
3766955 192.7.1.17 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FAM186A-B_C 0.94 88.0 6.65e-01 100.0% 47.6%
4426045 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.94 89.0 6.66e-01 100.0% 47.6%
3230775 192.1.1.25 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C 0.93 73.0 5.97e-01 80.9% 50.0%
4235024 109.4.1.2782 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, PF30363, PF30475 0.93 77.0 4.32e-01 88.2% 9.1%
4023890 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.93 68.0 6.44e-01 77.9% 65.8%
3781506 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.93 87.0 6.44e-01 100.0% 44.5%
3412574 3291.1.1.82 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING 0.93 87.0 6.80e-01 100.0% 52.3%
3753240 3291.1.1.54 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 0.92 84.0 6.00e-01 97.1% 38.2%
3560590 3755.3.1.142 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › FAM186A-B_C 0.92 86.0 6.43e-01 100.0% 46.0%
3175368 376.1.3.81 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Rbsn 0.92 76.0 7.37e-01 86.8% 80.0%
4973840 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.92 85.0 6.43e-01 98.5% 46.9%
3484742 3922.1.1.197 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp 0.91 84.0 7.65e-01 100.0% 77.6%
4002750 5086.1.1.118 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp 0.91 85.0 6.69e-01 100.0% 53.8%
4360895 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.90 64.0 5.40e-01 73.5% 47.6%
3595707 5086.1.1.118 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp 0.90 85.0 6.64e-01 100.0% 53.8%
4386662 3291.1.1.158 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N 0.90 85.0 6.92e-01 100.0% 60.0%
3840552 5086.1.1.90 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I 0.90 83.0 6.11e-01 100.0% 41.8%
5047072 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.90 79.0 5.83e-01 94.1% 40.6%
3904792 109.4.1.2788 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_6, PF30363, PF30475 0.90 74.0 4.16e-01 88.2% 9.1%
4338795 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.90 84.0 6.06e-01 100.0% 40.6%
3719459 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.89 83.0 5.88e-01 100.0% 37.3%
3692994 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.89 85.0 5.31e-01 100.0% 23.3%
None 0.89 83.0 6.53e-01 100.0% 53.8%
3576407 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.89 79.0 6.53e-01 95.6% 57.4%
4809272 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.89 81.0 6.61e-01 100.0% 57.0%
4985494 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.89 82.0 4.79e-01 98.5% 14.3%
3271459 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.89 83.0 6.22e-01 100.0% 45.3%
4477580 5086.1.1.118 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp 0.88 83.0 7.59e-01 100.0% 84.7%
3903422 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.88 80.0 6.46e-01 98.5% 55.0%
3968763 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.88 76.0 7.16e-01 92.6% 77.5%
3831567 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.87 80.0 5.84e-01 100.0% 48.8%
3671241 109.4.1.128 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.87 80.0 5.04e-01 100.0% 22.3%
4942288 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.86 69.0 5.99e-01 85.3% 58.0%
3697399 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 78.0 5.82e-01 100.0% 59.4%
3882466 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.85 76.0 6.21e-01 95.6% 60.9%
3628737 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.84 76.0 5.16e-01 100.0% 29.4%
3920715 2004.1.1.674 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B 0.84 76.0 4.47e-01 100.0% 13.5%
3965106 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.81 69.0 6.68e-01 91.2% 82.7%
4039421 3710.1.1.1 alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.81 66.0 5.75e-01 86.8% 61.0%
3972193 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.81 74.0 5.30e-01 98.5% 37.8%
3170139 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.80 72.0 5.48e-01 100.0% 45.2%
5054861 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.76 66.0 3.99e-01 100.0% 28.4%
3268739 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 67.0 5.89e-01 100.0% 68.0%
4018104 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 62.0 4.12e-01 100.0% 23.4%