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IMGVR_UViG_3300014887_000161-3300014887-Ga0180302_1000110217
Arc-VirIMGVR_UViG_3300014887_000161-3300014887-Ga0180302_1000110217
Identity
- Kingdom:
- archaea
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-84
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m8mA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.72 | 38.0 | 3.16e-01 | 92.9% | 30.3% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.71 | 39.0 | 3.71e-01 | 95.7% | 45.8% |
| 2v1yA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 36.0 | 3.35e-01 | 88.6% | 38.2% |
| 2byvE05 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 34.0 | 3.28e-01 | 87.1% | 43.0% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 29.0 | 3.11e-01 | 80.0% | 45.2% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 35.0 | 3.92e-01 | 94.3% | 67.2% |
| 2rh3A00 | 1.10.1220.190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain | 0.60 | 53.0 | 4.36e-01 | 95.7% | 98.3% |
| 2vvwA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.60 | 42.0 | 3.34e-01 | 75.7% | 68.0% |
| 1zbtA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 3.85e-01 | 95.7% | 94.5% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.29e-01 | 91.4% | 66.7% |
| 3ihjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 41.0 | 3.06e-01 | 75.7% | 63.3% |
| 1ywxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 35.0 | 3.24e-01 | 78.6% | 46.7% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.55 | 26.0 | 3.42e-01 | 87.1% | 80.0% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 48.0 | 3.71e-01 | 100.0% | 96.3% |
| 3ifrB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 48.0 | 3.32e-01 | 100.0% | 36.0% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.54 | 47.0 | 3.32e-01 | 100.0% | 80.3% |
| 4q34A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 46.0 | 3.04e-01 | 97.1% | 84.7% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.53 | 42.0 | 4.03e-01 | 100.0% | 73.9% |
| 4l3tA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 43.0 | 3.00e-01 | 88.6% | 60.2% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.53 | 35.0 | 3.08e-01 | 88.6% | 44.1% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 2.93e-01 | 95.7% | 44.9% |
| 6muwJ00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 45.0 | 3.29e-01 | 100.0% | 46.8% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.52 | 41.0 | 4.34e-01 | 85.7% | 96.9% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.51 | 47.0 | 3.29e-01 | 100.0% | 78.0% |
| 2r6fA04 | 1.10.8.280 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like | 0.51 | 43.0 | 3.71e-01 | 97.1% | 77.1% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 35.0 | 3.10e-01 | 72.9% | 96.2% |
| 3u7zA00 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.51 | 35.0 | 3.19e-01 | 72.9% | 94.8% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.50 | 42.0 | 2.96e-01 | 88.6% | 94.9% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 31.0 | 3.11e-01 | 88.6% | 59.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266211 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.68 | 47.0 | 5.50e-01 | 97.1% | 100.0% |
| 3653569 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.66 | 33.0 | 3.66e-01 | 87.1% | 60.0% |
| 3442112 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.66 | 33.0 | 3.64e-01 | 87.1% | 60.0% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 34.0 | 3.71e-01 | 88.6% | 61.7% |
| 3280874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 45.0 | 2.84e-01 | 77.1% | 71.3% |
| 3240679 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 32.0 | 2.46e-01 | 88.6% | 20.6% |
| 2869 | 101.1.11.8 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › VirC2 | 0.60 | 53.0 | 4.36e-01 | 95.7% | 98.3% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 48.0 | 3.92e-01 | 88.6% | 80.0% |
| 4029929 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 43.0 | 3.00e-01 | 77.1% | 90.8% |
| 1141934 | 3162.1.1.1 ↗ | a+b two layers › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › DUF6840 | 0.58 | 45.0 | 4.16e-01 | 91.4% | 64.6% |
| 3267835 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.57 | 44.0 | 3.82e-01 | 88.6% | 54.3% |
| 3447599 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 46.0 | 3.93e-01 | 90.0% | 75.7% |
| 3200147 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.57 | 39.0 | 2.96e-01 | 71.4% | 98.9% |
| 3806670 | 108.1.1.20 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like | 0.56 | 45.0 | 3.88e-01 | 90.0% | 75.7% |
| None | — | 0.55 | 45.0 | 2.85e-01 | 90.0% | 86.0% | |
| 3629758 | 577.1.1.1 ↗ | alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD | 0.55 | 35.0 | 3.52e-01 | 98.6% | 61.6% |
| 4344712 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.55 | 43.0 | 3.80e-01 | 88.6% | 58.0% |
| 4934021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 33.0 | 2.86e-01 | 91.4% | 34.2% |
| 3501234 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 43.0 | 2.73e-01 | 85.7% | 42.9% |
| 3914036 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.54 | 38.0 | 3.28e-01 | 72.9% | 90.5% |
| 185111 | 3554.1.1.1 ↗ | a+b duplicates or obligate multimers › protein of unknown function (eca1910) › protein of unknown function (eca1910) › protein of unknown function (eca1910) › DUF3861 | 0.54 | 42.0 | 4.05e-01 | 100.0% | 74.7% |
| 3846164 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 44.0 | 3.02e-01 | 100.0% | 75.6% |
| 3271607 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 2.99e-01 | 88.6% | 48.1% |
| 4393468 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.53 | 39.0 | 3.23e-01 | 78.6% | 75.4% |
| 3923193 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.53 | 47.0 | 3.05e-01 | 100.0% | 28.8% |
| 4323898 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.53 | 37.0 | 2.97e-01 | 74.3% | 64.7% |
| 3872321 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 42.0 | 2.66e-01 | 84.3% | 30.0% |
| 3595532 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 45.0 | 3.03e-01 | 97.1% | 61.1% |
| 3519143 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 41.0 | 2.66e-01 | 82.9% | 24.3% |
| 1888906 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.52 | 42.0 | 2.66e-01 | 90.0% | 84.6% |
| 3242055 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 44.0 | 2.68e-01 | 100.0% | 32.5% |
| 3500824 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 47.0 | 2.94e-01 | 100.0% | 35.7% |
| 2755218 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 40.0 | 2.89e-01 | 84.3% | 49.5% |
| 3098534 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.51 | 41.0 | 3.47e-01 | 91.4% | 88.9% |
| 3253864 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.51 | 47.0 | 3.12e-01 | 100.0% | 46.7% |
| 5046521 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.51 | 41.0 | 3.48e-01 | 91.4% | 75.8% |
| 3593808 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 35.0 | 3.19e-01 | 74.3% | 55.0% |
| 3700065 | 304.49.1.0 ↗ | a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 | 0.50 | 35.0 | 3.07e-01 | 74.3% | 96.4% |