←Back to structures

IMGVR_UViG_3300014903_000038-3300014903-Ga0164321_1000009817

Arc-Vir

IMGVR_UViG_3300014903_000038-3300014903-Ga0164321_1000009817

Identity

Kingdom:
archaea

Quality

72.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-38_50-87
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 60.0 5.82e-01 80.7% 98.4%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 62.0 5.33e-01 86.0% 64.7%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.75 59.0 5.89e-01 84.2% 81.4%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.75 60.0 6.05e-01 86.0% 91.1%
2yi9A02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 47.0 4.91e-01 84.2% 71.2%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.73 54.0 5.94e-01 78.9% 100.0%
2jdiH02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.72 50.0 5.63e-01 75.4% 100.0%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.70 55.0 5.54e-01 84.2% 96.5%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.68 49.0 4.62e-01 82.5% 62.9%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 47.0 5.26e-01 77.2% 100.0%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.65 52.0 4.18e-01 91.2% 72.9%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.64 45.0 4.67e-01 78.9% 82.7%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.63 44.0 3.82e-01 73.7% 85.1%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 47.0 2.93e-01 84.2% 44.6%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 50.0 3.26e-01 98.2% 25.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4856197 633.16.1.2 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › TcdB_N 0.77 61.0 4.86e-01 86.0% 50.0%
4048210 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.76 56.0 6.16e-01 78.9% 100.0%
4418131 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.75 58.0 6.19e-01 82.5% 100.0%
3304130 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.75 54.0 5.96e-01 77.2% 97.8%
3703545 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 55.0 3.88e-01 82.5% 32.8%
4367627 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.73 56.0 5.85e-01 84.2% 90.6%
4025064 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.73 62.0 5.98e-01 96.5% 98.5%
3959888 3922.1.1.159 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PPE 0.72 55.0 4.43e-01 82.5% 48.2%
3223055 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.70 58.0 3.19e-01 91.2% 6.2%
3764064 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.70 58.0 5.08e-01 91.2% 85.9%
4371213 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.70 48.0 3.94e-01 71.9% 45.0%
3595966 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 55.0 5.21e-01 87.7% 85.3%
5067349 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.70 59.0 5.39e-01 94.7% 80.0%
3518918 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.69 54.0 4.91e-01 84.2% 69.3%
3775067 198.1.1.21 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2 0.66 51.0 4.08e-01 86.0% 60.0%
3317025 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 47.0 3.48e-01 77.2% 30.3%
3643105 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.62 51.0 3.73e-01 91.2% 42.6%
4976490 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 50.0 3.73e-01 94.7% 96.7%