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IMGVR_UViG_3300014903_000038-3300014903-Ga0164321_100000986

Arc-Vir

IMGVR_UViG_3300014903_000038-3300014903-Ga0164321_100000986

Identity

Kingdom:
archaea

Quality

62.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-46
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e70C01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.77 64.0 5.00e-01 95.5% 57.7%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.77 65.0 5.38e-01 100.0% 69.0%
1rkbA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 54.0 3.57e-01 75.0% 20.2%
1wwuA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.67 56.0 5.04e-01 100.0% 73.4%
3u66A00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.66 57.0 3.74e-01 93.2% 67.3%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.64 51.0 4.06e-01 93.2% 100.0%
3kp1E02 1.10.8.1000 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like 0.59 47.0 4.20e-01 95.5% 85.7%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.58 46.0 4.23e-01 97.7% 66.2%
3k92A01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 42.0 3.92e-01 100.0% 71.7%
4bqhA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 41.0 2.36e-01 100.0% 72.9%
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 40.0 3.85e-01 93.2% 82.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238122 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.76 54.0 3.50e-01 75.0% 19.4%
5028706 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.76 54.0 3.66e-01 75.0% 24.1%
4284927 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.71 59.0 5.39e-01 93.2% 81.0%
4948393 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.69 59.0 4.86e-01 97.7% 68.8%
4453525 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.68 55.0 4.97e-01 95.5% 84.6%
4243302 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.65 53.0 4.94e-01 90.9% 81.8%
4611605 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.65 51.0 5.13e-01 93.2% 100.0%
3604236 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.53e-01 95.5% 65.3%
5054660 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 50.0 4.52e-01 100.0% 70.8%
4989283 3009.1.1.3 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Thioredoxin_5 0.56 46.0 3.04e-01 100.0% 62.3%
5001590 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.50 35.0 3.38e-01 79.5% 69.1%
D2 high residues 52-125
PDB