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IMGVR_UViG_3300014903_000359-3300014903-Ga0164321_1000160510
Arc-VirIMGVR_UViG_3300014903_000359-3300014903-Ga0164321_1000160510
Identity
- Kingdom:
- archaea
Quality
94.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-221
Domain cluster:
rep: OP947166.1__WBC28587.1__TPMD04_36__00036__D165-348
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01520.24 best | Amidase_3 | 52.0 | 1.30e-13 | 93.7% | 89.7% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jwqA00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.90 | 78.0 | 8.12e-01 | 100.0% | 94.4% |
| 4rn7A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.90 | 80.0 | 8.14e-01 | 100.0% | 93.0% |
| 5j72A01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.86 | 79.0 | 7.82e-01 | 98.9% | 91.3% |
| 1xovA01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.86 | 73.0 | 7.64e-01 | 99.5% | 94.4% |
| 3qayA00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.83 | 71.0 | 7.33e-01 | 98.4% | 93.3% |
| 4lq6A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.82 | 79.0 | 7.60e-01 | 100.0% | 94.4% |
| 8c2oB01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.81 | 78.0 | 7.34e-01 | 100.0% | 96.0% |
| 3ne8A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.80 | 77.0 | 7.19e-01 | 100.0% | 93.4% |
| 8c0jA01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.80 | 76.0 | 7.60e-01 | 100.0% | 96.9% |
| 2qvpC00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.69 | 61.0 | 5.39e-01 | 94.2% | 99.3% |
| 5k8pD01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.68 | 64.0 | 5.45e-01 | 100.0% | 91.2% |
| 2pokA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.68 | 63.0 | 5.40e-01 | 98.9% | 90.3% |
| 1yqeA01 | 3.40.630.50 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like | 0.68 | 60.0 | 6.08e-01 | 100.0% | 94.6% |
| 3ramA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.67 | 63.0 | 5.54e-01 | 99.5% | 87.1% |
| 3isxA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.64 | 60.0 | 5.45e-01 | 98.9% | 95.9% |
| 1yw4B00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.62 | 58.0 | 4.88e-01 | 99.5% | 77.3% |
| 8einA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.62 | 56.0 | 4.83e-01 | 95.8% | 88.7% |
| 4o89A02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.58 | 27.0 | 3.71e-01 | 94.7% | 87.2% |
| 2h8lA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 30.0 | 3.81e-01 | 100.0% | 83.9% |
| 1qmiA02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.57 | 26.0 | 3.67e-01 | 98.9% | 89.0% |
| 3tbfA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.56 | 36.0 | 4.04e-01 | 86.3% | 82.6% |
| 8e9gE02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 25.0 | 3.28e-01 | 92.1% | 74.8% |
| 3okpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 38.0 | 3.84e-01 | 100.0% | 73.5% |
| 2gaxA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.51 | 29.0 | 3.40e-01 | 80.0% | 78.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4230376 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.93 | 80.0 | 8.28e-01 | 100.0% | 93.3% |
| 4180517 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.91 | 79.0 | 8.11e-01 | 100.0% | 93.3% |
| 4257112 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.91 | 78.0 | 8.08e-01 | 100.0% | 93.8% |
| 1736724 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.91 | 78.0 | 8.08e-01 | 100.0% | 93.3% |
| 2889942 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.91 | 76.0 | 7.96e-01 | 100.0% | 93.2% |
| 1406254 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.90 | 80.0 | 8.14e-01 | 100.0% | 93.0% |
| 3587576 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.90 | 77.0 | 7.97e-01 | 100.0% | 93.8% |
| 3955224 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.86 | 78.0 | 7.25e-01 | 100.0% | 77.0% |
| 2029633 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.86 | 79.0 | 7.98e-01 | 99.5% | 94.7% |
| 3959830 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.86 | 78.0 | 7.67e-01 | 100.0% | 88.5% |
| 10179 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.86 | 74.0 | 7.58e-01 | 99.5% | 92.8% |
| 4421480 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.85 | 74.0 | 7.67e-01 | 100.0% | 95.0% |
| 145930 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.83 | 71.0 | 7.33e-01 | 98.4% | 93.3% |
| 2772634 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.83 | 79.0 | 7.80e-01 | 100.0% | 94.9% |
| 3962927 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.83 | 80.0 | 7.68e-01 | 100.0% | 96.2% |
| 3954478 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.83 | 80.0 | 7.52e-01 | 100.0% | 91.8% |
| 3288160 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.82 | 79.0 | 7.16e-01 | 100.0% | 84.5% |
| 3385507 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.82 | 79.0 | 7.30e-01 | 100.0% | 94.3% |
| 5019097 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.81 | 78.0 | 7.61e-01 | 100.0% | 92.2% |
| 3947578 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.81 | 79.0 | 7.16e-01 | 100.0% | 91.3% |
| 5029849 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.81 | 79.0 | 7.48e-01 | 100.0% | 93.5% |
| 4005299 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.81 | 78.0 | 6.82e-01 | 100.0% | 80.8% |
| 5062843 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.81 | 78.0 | 7.09e-01 | 100.0% | 92.1% |
| 4378040 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.81 | 78.0 | 7.18e-01 | 100.0% | 94.4% |
| 4971845 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.75 | 62.0 | 6.42e-01 | 99.5% | 90.5% |
| 4949213 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.73 | 53.0 | 4.90e-01 | 100.0% | 58.0% |
| 3593152 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.73 | 67.0 | 5.14e-01 | 98.4% | 93.5% |
| 3720173 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.73 | 66.0 | 4.87e-01 | 97.4% | 89.9% |
| 5023853 | 2011.1.1.10 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase | 0.72 | 61.0 | 6.40e-01 | 100.0% | 96.6% |
| 5000976 | 2011.1.1.10 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase | 0.71 | 67.0 | 6.24e-01 | 98.9% | 83.9% |
| 3903399 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.69 | 64.0 | 5.43e-01 | 99.5% | 91.1% |
| 5014270 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.66 | 61.0 | 5.57e-01 | 98.9% | 96.4% |
| 3902038 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.66 | 53.0 | 5.33e-01 | 82.6% | 84.7% |
| 4110960 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.63 | 29.0 | 4.03e-01 | 93.7% | 86.3% |
| 4927197 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.62 | 30.0 | 4.09e-01 | 93.7% | 88.0% |
| 5002385 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.61 | 33.0 | 4.25e-01 | 99.5% | 90.9% |
| 4958053 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.61 | 33.0 | 4.16e-01 | 100.0% | 87.0% |
| 3250262 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.59 | 29.0 | 3.10e-01 | 100.0% | 50.9% |
| 3337149 | 2485.1.1.9 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx | 0.58 | 30.0 | 3.48e-01 | 92.6% | 67.7% |
| 3971302 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.58 | 27.0 | 3.75e-01 | 87.4% | 86.3% |
| 3961851 | 2485.1.1.9 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx | 0.56 | 26.0 | 2.78e-01 | 92.1% | 48.1% |
| 4501353 | 2485.1.1.9 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx | 0.56 | 26.0 | 3.57e-01 | 92.1% | 91.8% |
| 4972788 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.55 | 26.0 | 3.34e-01 | 99.5% | 73.6% |
| 5080664 | 2485.1.1.9 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx | 0.51 | 23.0 | 3.22e-01 | 99.5% | 90.4% |