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IMGVR_UViG_3300014911_000041-3300014911-Ga0180301_1000169629
Arc-VirIMGVR_UViG_3300014911_000041-3300014911-Ga0180301_1000169629
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 214-301
D2
medium
residues 35-213_302-364
Domain cluster:
rep: IMGVR_UViG_3300035312_000244-3300035312-Ga0393750_008065_4082_5470__D34-230_308-363
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.71 | 37.0 | 5.07e-01 | 84.7% | 96.1% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.60 | 29.0 | 4.11e-01 | 81.0% | 97.3% |
| 4ffkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.60 | 30.0 | 4.02e-01 | 81.0% | 91.1% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.58 | 17.0 | 3.16e-01 | 90.9% | 86.8% |
| 3r5lA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 18.0 | 2.62e-01 | 91.3% | 62.1% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.52 | 16.0 | 2.88e-01 | 83.5% | 100.0% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.51 | 21.0 | 3.08e-01 | 96.3% | 85.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4891117 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.77 | 73.0 | 5.38e-01 | 100.0% | 91.3% |
| 4424174 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.62 | 58.0 | 5.31e-01 | 97.1% | 85.0% |
| 5004294 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.61 | 57.0 | 5.49e-01 | 96.3% | 89.3% |
| 4954546 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.61 | 57.0 | 5.29e-01 | 96.7% | 84.8% |
| 4676609 | 4038.1.1.10 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Portal_Mu | 0.60 | 58.0 | 5.30e-01 | 100.0% | 84.3% |
| 3980619 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.60 | 57.0 | 5.07e-01 | 98.8% | 81.6% |
| 5082726 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.59 | 57.0 | 5.57e-01 | 99.6% | 97.7% |
| 3942126 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.57 | 53.0 | 4.90e-01 | 98.3% | 80.3% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.55 | 51.0 | 4.69e-01 | 97.9% | 79.3% |
| 3164784 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.55 | 51.0 | 4.70e-01 | 98.8% | 78.7% |
| 3573560 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 15.0 | 2.34e-01 | 87.2% | 52.0% |
| 3526485 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.53 | 20.0 | 2.90e-01 | 88.8% | 71.8% |
| 3797096 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 34.0 | 3.75e-01 | 92.1% | 81.6% |