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IMGVR_UViG_3300014911_000320-3300014911-Ga0180301_100072987

Arc-Vir

IMGVR_UViG_3300014911_000320-3300014911-Ga0180301_100072987

Quality

79.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 55.0 5.13e-01 100.0% 69.0%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.70 48.0 5.21e-01 75.4% 89.1%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.66 50.0 3.86e-01 84.2% 51.5%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 58.0 4.76e-01 100.0% 68.0%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 4.84e-01 100.0% 74.5%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 55.0 4.66e-01 100.0% 74.5%
4zpjA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 49.0 3.48e-01 82.5% 28.7%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 43.0 3.36e-01 71.9% 36.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 56.0 4.81e-01 100.0% 71.7%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 55.0 4.66e-01 100.0% 58.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 55.0 4.70e-01 100.0% 74.5%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 4.39e-01 100.0% 76.4%
1f0lA03 2.60.40.700 Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain 0.61 50.0 3.78e-01 100.0% 36.4%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.59 48.0 3.43e-01 94.7% 32.8%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.59 49.0 4.45e-01 100.0% 67.5%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 47.0 3.90e-01 93.0% 98.2%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 41.0 3.21e-01 78.9% 32.1%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 52.0 4.88e-01 100.0% 92.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 49.0 3.82e-01 100.0% 78.2%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 4.15e-01 94.7% 97.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.48e-01 91.2% 87.5%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 40.0 3.31e-01 78.9% 72.4%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 46.0 3.57e-01 100.0% 63.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.74e-01 98.2% 51.0%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 3.22e-01 70.2% 93.5%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 46.0 4.02e-01 100.0% 83.9%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 39.0 3.26e-01 91.2% 40.7%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.53 43.0 3.52e-01 91.2% 55.0%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 44.0 3.42e-01 100.0% 64.3%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 40.0 2.94e-01 89.5% 78.2%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.25e-01 86.0% 44.9%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.52 44.0 3.73e-01 100.0% 77.9%
1qe5A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 41.0 2.81e-01 96.5% 33.1%
3vb0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.21e-01 100.0% 47.5%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.18e-01 98.2% 95.1%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 40.0 3.26e-01 100.0% 65.5%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 2.39e-01 86.0% 51.9%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 40.0 2.56e-01 100.0% 88.2%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.50 34.0 3.62e-01 71.9% 93.6%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.50 37.0 3.17e-01 91.2% 45.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930641 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.75 51.0 4.19e-01 71.9% 52.4%
4338601 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 5.12e-01 100.0% 56.7%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 57.0 5.25e-01 100.0% 66.7%
4245518 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 5.34e-01 100.0% 68.0%
4060488 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 58.0 5.15e-01 100.0% 63.7%
3933294 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 49.0 4.01e-01 71.9% 51.4%
4066146 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 4.72e-01 100.0% 49.5%
4059476 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 60.0 4.74e-01 98.2% 63.3%
3597513 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.78e-01 71.9% 78.2%
1688248 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 55.0 5.00e-01 100.0% 65.8%
4937032 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.67 48.0 3.50e-01 75.4% 93.1%
2036627 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.66 45.0 4.24e-01 71.9% 67.6%
4632674 223.1.1.171 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.66 47.0 3.74e-01 75.4% 54.8%
3504860 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 55.0 5.15e-01 94.7% 92.9%
4950268 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.64 44.0 4.35e-01 70.2% 73.3%
1171020 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 57.0 4.79e-01 100.0% 69.8%
3822850 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 57.0 4.74e-01 100.0% 71.0%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 57.0 5.14e-01 100.0% 74.4%
5016579 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 57.0 5.11e-01 100.0% 73.4%
161224 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 57.0 4.71e-01 100.0% 66.0%
4952455 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 57.0 4.90e-01 100.0% 74.2%
4945827 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 57.0 4.86e-01 100.0% 73.3%
5063794 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 55.0 4.95e-01 100.0% 70.0%
4668791 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 56.0 4.57e-01 100.0% 59.0%
5069810 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 57.0 5.04e-01 100.0% 72.5%
5001596 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 55.0 4.75e-01 100.0% 73.3%
5037078 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.63 51.0 4.24e-01 93.0% 52.6%
3966451 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 54.0 4.58e-01 100.0% 73.7%
4451321 11.1.1.335 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.61 42.0 3.39e-01 71.9% 66.1%
4129006 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.61 53.0 4.53e-01 100.0% 73.7%
5083379 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 52.0 4.55e-01 100.0% 73.0%
3504502 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.61 52.0 4.22e-01 100.0% 62.3%
4422251 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.61 48.0 5.06e-01 93.0% 96.0%
4927036 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 52.0 4.62e-01 100.0% 67.1%
3275404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.77e-01 93.0% 81.7%
4189267 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.60 47.0 4.69e-01 86.0% 98.3%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.60 50.0 4.64e-01 96.5% 72.9%
3219717 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 50.0 4.45e-01 100.0% 73.3%
3407712 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 50.0 4.33e-01 100.0% 66.3%
3214386 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 43.0 4.47e-01 75.4% 92.0%
1487323 79.1.1.4 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PhageP22-tail 0.58 40.0 3.20e-01 71.9% 36.7%
3390537 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 45.0 2.85e-01 91.2% 61.2%
146935 3158.1.1.1 beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.57 52.0 4.85e-01 100.0% 91.3%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.57 46.0 4.65e-01 96.5% 86.2%
3818556 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 44.0 2.75e-01 84.2% 92.9%
3593240 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 41.0 2.86e-01 78.9% 28.3%
5040837 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 43.0 3.93e-01 82.5% 97.3%
4312097 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.56 42.0 3.12e-01 86.0% 97.1%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 48.0 4.64e-01 100.0% 89.2%
3627222 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.56 41.0 3.24e-01 80.7% 77.6%
3935469 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 47.0 4.46e-01 94.7% 84.3%
3963760 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 45.0 3.45e-01 93.0% 37.8%
3387378 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 47.0 4.20e-01 100.0% 87.1%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.44e-01 93.0% 83.1%
3970039 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 44.0 3.39e-01 93.0% 40.7%
4982659 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 46.0 2.86e-01 100.0% 17.4%
4116186 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.54 39.0 2.86e-01 82.5% 78.4%
3262013 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.53 44.0 3.52e-01 100.0% 90.0%
5065747 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.53 42.0 3.65e-01 93.0% 56.7%
3663984 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 42.0 3.07e-01 96.5% 59.5%
4971091 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.51 42.0 3.14e-01 87.7% 97.0%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.51 41.0 3.93e-01 93.0% 92.9%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.58e-01 93.0% 81.1%