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IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_100001541

Arc-Vir

IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_100001541

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-104
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02747.21 best PCNA_C 30.7 4.40e-07 94.2% 46.9%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.88 80.0 6.04e-01 99.0% 44.8%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.88 80.0 5.89e-01 100.0% 40.8%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.87 82.0 6.02e-01 100.0% 42.6%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.87 81.0 5.97e-01 100.0% 42.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.87 82.0 6.05e-01 100.0% 43.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.87 82.0 5.96e-01 100.0% 41.8%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.86 81.0 7.47e-01 100.0% 84.4%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 80.0 5.98e-01 100.0% 43.7%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 79.0 5.84e-01 100.0% 41.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 79.0 5.76e-01 100.0% 41.1%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 78.0 5.59e-01 100.0% 37.9%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 77.0 5.64e-01 100.0% 40.6%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 77.0 7.25e-01 100.0% 85.5%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 78.0 5.50e-01 100.0% 42.9%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 76.0 5.60e-01 100.0% 42.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 76.0 5.58e-01 100.0% 41.6%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 74.0 6.20e-01 100.0% 69.7%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 71.0 5.71e-01 100.0% 50.8%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 71.0 6.78e-01 100.0% 84.0%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 69.0 6.64e-01 100.0% 84.0%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 68.0 5.70e-01 100.0% 58.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 65.0 6.35e-01 100.0% 85.0%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 70.0 6.53e-01 100.0% 84.1%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 68.0 6.32e-01 100.0% 82.3%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 61.0 4.64e-01 100.0% 42.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 33.0 2.91e-01 98.1% 31.8%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 30.0 3.29e-01 100.0% 54.5%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 27.0 3.18e-01 78.8% 59.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.60 35.0 4.14e-01 100.0% 85.9%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 36.0 3.55e-01 75.0% 99.1%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991675 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.92 88.0 8.15e-01 100.0% 84.0%
5027067 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.90 86.0 8.14e-01 100.0% 88.3%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.90 86.0 7.87e-01 100.0% 81.2%
5011281 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.90 84.0 7.85e-01 100.0% 82.4%
4948360 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.89 84.0 7.72e-01 100.0% 79.8%
5056758 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.89 81.0 7.85e-01 100.0% 87.0%
5060716 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.89 85.0 7.77e-01 100.0% 83.8%
4030418 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.89 85.0 7.52e-01 100.0% 84.3%
5033948 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.89 84.0 7.66e-01 100.0% 79.2%
4936050 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.89 84.0 7.82e-01 100.0% 84.0%
4934002 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 84.0 7.68e-01 100.0% 80.0%
4983064 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 84.0 7.81e-01 100.0% 84.7%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.88 80.0 7.45e-01 100.0% 79.2%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 84.0 7.72e-01 100.0% 81.2%
5051689 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 84.0 7.81e-01 100.0% 84.8%
4456195 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.88 83.0 7.83e-01 100.0% 85.8%
4956740 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 84.0 7.78e-01 100.0% 84.8%
5043507 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 83.0 7.89e-01 100.0% 88.3%
2392831 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 83.0 7.69e-01 100.0% 82.7%
4660283 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 83.0 7.75e-01 100.0% 84.8%
4943405 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 83.0 7.74e-01 100.0% 84.8%
5028024 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.88 83.0 7.63e-01 100.0% 80.0%
309454 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.87 83.0 7.53e-01 100.0% 78.8%
4998585 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 80.0 7.61e-01 100.0% 84.2%
4995028 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 83.0 7.69e-01 100.0% 86.4%
4026069 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 82.0 7.43e-01 100.0% 81.5%
3292092 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 82.0 7.46e-01 100.0% 83.6%
2805173 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 81.0 7.57e-01 100.0% 82.4%
5037314 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.87 82.0 7.77e-01 100.0% 86.7%
4992059 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 82.0 7.66e-01 100.0% 85.4%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 82.0 7.22e-01 100.0% 76.2%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.87 82.0 7.27e-01 100.0% 84.3%
2588759 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.86 82.0 7.69e-01 100.0% 86.0%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.86 81.0 6.97e-01 100.0% 83.2%
167574 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.86 80.0 7.35e-01 100.0% 78.6%
4212381 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.86 82.0 7.36e-01 100.0% 79.3%
4929645 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.86 80.0 7.51e-01 100.0% 84.0%
5991 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.86 79.0 7.45e-01 100.0% 83.6%
3478160 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.86 80.0 7.41e-01 100.0% 85.2%
3407531 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.85 80.0 7.25e-01 100.0% 78.5%
4517015 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.85 79.0 7.42e-01 100.0% 83.9%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.85 79.0 7.29e-01 100.0% 83.1%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.85 79.0 7.16e-01 100.0% 83.7%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.85 80.0 6.25e-01 100.0% 68.0%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.85 77.0 7.32e-01 100.0% 84.2%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.84 77.0 7.19e-01 100.0% 80.8%
3787933 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.84 78.0 6.68e-01 100.0% 83.1%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.84 78.0 6.93e-01 100.0% 86.2%
3406312 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.84 79.0 7.42e-01 100.0% 85.4%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.84 79.0 7.25e-01 100.0% 80.0%
3406311 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.84 78.0 6.75e-01 100.0% 79.4%
3664260 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.84 78.0 6.53e-01 100.0% 81.8%
3624709 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.84 79.0 7.26e-01 100.0% 80.8%
4172290 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.84 79.0 7.24e-01 100.0% 81.5%
1924008 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.84 77.0 7.07e-01 100.0% 78.1%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.84 79.0 7.33e-01 100.0% 85.6%
4987602 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 78.0 7.25e-01 100.0% 82.4%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.83 78.0 7.03e-01 100.0% 85.2%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 75.0 7.14e-01 100.0% 84.2%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.83 77.0 6.52e-01 100.0% 65.0%
3743107 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.82 77.0 6.90e-01 100.0% 82.9%
3251868 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.82 77.0 6.88e-01 100.0% 82.9%
3936915 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.82 77.0 7.08e-01 100.0% 83.8%
143269 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 75.0 7.05e-01 100.0% 81.6%
3520418 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 76.0 6.66e-01 100.0% 83.3%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 76.0 7.10e-01 100.0% 84.8%
4142781 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 75.0 6.98e-01 100.0% 81.6%
4026073 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 75.0 7.07e-01 100.0% 89.6%
4302174 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 73.0 6.88e-01 100.0% 80.8%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.81 76.0 6.70e-01 100.0% 82.8%
4937819 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.81 75.0 7.01e-01 100.0% 82.4%
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 69.0 6.66e-01 100.0% 81.7%
5039219 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 75.0 7.05e-01 100.0% 83.2%
3715457 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 75.0 6.52e-01 100.0% 86.2%
4934001 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 74.0 6.97e-01 100.0% 84.8%
3022412 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 74.0 6.65e-01 100.0% 77.5%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 72.0 6.78e-01 100.0% 80.8%
3599554 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 74.0 6.48e-01 100.0% 82.7%
4437554 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.80 74.0 6.90e-01 100.0% 81.6%
3936914 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 6.82e-01 100.0% 83.1%
5043506 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 72.0 6.75e-01 100.0% 80.8%
3230926 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 73.0 6.78e-01 100.0% 80.8%
143267 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 74.0 6.87e-01 100.0% 82.7%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 71.0 6.75e-01 100.0% 83.3%
2325189 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 6.55e-01 100.0% 81.0%
1871497 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 67.0 6.40e-01 100.0% 81.5%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 66.0 6.33e-01 100.0% 80.0%
5059299 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 68.0 6.45e-01 100.0% 82.5%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.76 69.0 6.52e-01 99.0% 84.0%
4633559 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.75 70.0 6.50e-01 100.0% 82.0%
4995744 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.67 59.0 5.59e-01 100.0% 81.3%
4985600 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 35.0 3.91e-01 81.7% 90.0%