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IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015419

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015419 ↗
Kingdom:: archaea

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1cxzB00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.85	60.0	5.48e-01	73.1%	59.3%
2nn4A00	1.10.287.760	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like	0.84	52.0	5.48e-01	77.6%	69.4%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.76	52.0	5.07e-01	71.6%	67.6%
4abxA02	6.10.140.1090	Special › Helix non-globular › Helix Hairpins ›	0.76	51.0	4.69e-01	70.1%	62.1%
3qf7A02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.72	52.0	5.33e-01	74.6%	87.3%
1hciA03	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	46.0	3.89e-01	74.6%	56.7%
3rc3A05	1.20.58.1080	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	60.0	4.97e-01	100.0%	85.0%
5tqbB01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	50.0	3.30e-01	95.5%	36.7%
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.62	42.0	4.12e-01	73.1%	70.5%
3eoqB02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.51	42.0	3.06e-01	89.6%	73.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4010384	361.1.1.0 ↗	few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain	0.84	58.0	5.88e-01	71.6%	95.4%
3693465	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.84	61.0	4.90e-01	76.1%	73.3%
3306481	604.12.1.84 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF26575	0.81	57.0	5.84e-01	73.1%	81.5%
2464385	192.27.1.0 ↗	alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase	0.79	55.0	5.68e-01	71.6%	76.2%
5045529	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.77	50.0	5.12e-01	71.6%	69.2%
3559937	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.75	53.0	4.56e-01	74.6%	47.6%
4242973	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.68	49.0	3.63e-01	74.6%	63.7%
3389546	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.66	45.0	4.30e-01	71.6%	62.5%
4595410	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.66	45.0	4.55e-01	71.6%	80.0%
3726193	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	54.0	3.87e-01	91.0%	38.9%
3199446	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.55	45.0	4.01e-01	91.0%	66.0%
4983539	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.52	46.0	3.10e-01	100.0%	35.4%

D2 medium residues 68-156

PDB