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IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015444
Arc-VirIMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015444
Identity
- Kingdom:
- archaea
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-105
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zogA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.65 | 50.0 | 3.29e-01 | 82.2% | 44.7% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.62 | 42.0 | 3.72e-01 | 82.2% | 50.0% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.59 | 49.0 | 3.31e-01 | 89.0% | 82.5% |
| 1jc4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 42.0 | 3.41e-01 | 86.3% | 38.6% |
| 3f1zI00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 48.0 | 4.12e-01 | 89.0% | 72.4% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.58 | 40.0 | 2.76e-01 | 72.6% | 85.5% |
| 1i1jB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 39.0 | 3.56e-01 | 100.0% | 51.0% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 43.0 | 3.99e-01 | 82.2% | 93.8% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 42.0 | 4.19e-01 | 80.8% | 83.5% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 41.0 | 4.16e-01 | 86.3% | 78.4% |
| 1jz7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.58e-01 | 78.1% | 98.3% |
| 1nw1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 41.0 | 3.84e-01 | 79.5% | 61.5% |
| 4ys4A02 | 2.60.40.2860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 45.0 | 3.75e-01 | 87.7% | 73.6% |
| 2lfpA01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.56 | 41.0 | 3.46e-01 | 82.2% | 89.0% |
| 3uroR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 3.61e-01 | 76.7% | 95.0% |
| 4hqnA01 | 2.20.100.10 | Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat | 0.55 | 38.0 | 3.95e-01 | 71.2% | 95.4% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 42.0 | 4.05e-01 | 82.2% | 74.7% |
| 1evjC02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 47.0 | 3.60e-01 | 100.0% | 76.8% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 3.63e-01 | 89.0% | 97.7% |
| 6nyoA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 38.0 | 2.82e-01 | 72.6% | 52.7% |
| 1ajwA00 | 2.70.50.30 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 | 0.53 | 42.0 | 3.40e-01 | 86.3% | 84.8% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.53 | 43.0 | 3.55e-01 | 95.9% | 80.5% |
| 2rovA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 3.98e-01 | 100.0% | 86.3% |
| 3p8aA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 39.0 | 3.16e-01 | 87.7% | 37.5% |
| 6bxuA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.53 | 42.0 | 3.92e-01 | 89.0% | 93.7% |
| 3fcsA03 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.52 | 38.0 | 3.17e-01 | 79.5% | 94.2% |
| 1imhC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.74e-01 | 89.0% | 87.7% |
| 7z6eA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.84e-01 | 100.0% | 84.4% |
| 7skhB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 41.0 | 3.79e-01 | 89.0% | 94.8% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 38.0 | 3.06e-01 | 83.6% | 43.3% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.51 | 36.0 | 3.47e-01 | 82.2% | 65.1% |
| 3qugA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.57e-01 | 90.4% | 86.7% |
| 3wo4C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.77e-01 | 87.7% | 91.2% |
| 2z1aA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 35.0 | 2.46e-01 | 76.7% | 94.4% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3168452 | 331.10.2.3 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 | 0.75 | 46.0 | 4.06e-01 | 80.8% | 42.9% |
| 4316603 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.62 | 49.0 | 4.93e-01 | 100.0% | 85.3% |
| 3204249 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.61 | 45.0 | 2.82e-01 | 79.5% | 14.9% |
| 3726379 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.60 | 51.0 | 4.54e-01 | 95.9% | 89.5% |
| 5017212 | 11.1.1.1443 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 | 0.59 | 48.0 | 4.13e-01 | 89.0% | 87.8% |
| 3871082 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 46.0 | 3.66e-01 | 84.9% | 69.3% |
| 3540088 | 220.1.1.184 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP | 0.59 | 51.0 | 4.30e-01 | 100.0% | 77.7% |
| 3771653 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 44.0 | 3.98e-01 | 87.7% | 57.1% |
| 4023575 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 45.0 | 4.19e-01 | 87.7% | 66.3% |
| 3575253 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 36.0 | 3.69e-01 | 91.8% | 65.7% |
| 3364715 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 42.0 | 4.01e-01 | 78.1% | 88.2% |
| 3219500 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 49.0 | 3.26e-01 | 98.6% | 43.4% |
| 185233 | 2.1.1.61 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-like | 0.57 | 48.0 | 4.12e-01 | 94.5% | 77.3% |
| 3269121 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.57 | 49.0 | 4.35e-01 | 100.0% | 76.4% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.56 | 42.0 | 3.94e-01 | 84.9% | 64.4% |
| 3490984 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.56 | 43.0 | 2.50e-01 | 82.2% | 15.8% |
| 3701275 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 47.0 | 3.94e-01 | 100.0% | 82.1% |
| 4649465 | 207.12.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region › PF26360, PF26364 | 0.56 | 42.0 | 2.73e-01 | 80.8% | 29.7% |
| 3633078 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 48.0 | 4.11e-01 | 100.0% | 76.8% |
| 3398510 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.56 | 42.0 | 2.71e-01 | 84.9% | 26.7% |
| 1697915 | 825.1.1.2 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 | 0.56 | 42.0 | 2.87e-01 | 80.8% | 45.2% |
| 4543324 | 2003.1.5.141 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › EcoRI_methylase | 0.55 | 39.0 | 2.72e-01 | 75.3% | 24.2% |
| 3924626 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.55 | 39.0 | 3.78e-01 | 75.3% | 83.5% |
| 3989293 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 38.0 | 3.34e-01 | 82.2% | 46.1% |
| 3218216 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.55 | 47.0 | 3.80e-01 | 100.0% | 74.8% |
| 4957500 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.55 | 41.0 | 3.80e-01 | 80.8% | 90.5% |
| 4964031 | 7089.1.1.7 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 | 0.54 | 35.0 | 3.59e-01 | 74.0% | 68.6% |
| 4004011 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 43.0 | 3.75e-01 | 86.3% | 60.9% |
| 3876143 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 38.0 | 3.18e-01 | 75.3% | 67.4% |
| 3814983 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.54 | 39.0 | 3.90e-01 | 78.1% | 97.3% |
| 3509053 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.53 | 38.0 | 3.26e-01 | 82.2% | 43.8% |
| 1234289 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.53 | 42.0 | 3.34e-01 | 86.3% | 53.9% |
| 3608576 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 42.0 | 3.79e-01 | 87.7% | 74.3% |
| 3215628 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.53 | 41.0 | 2.69e-01 | 86.3% | 18.7% |
| 3797649 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 40.0 | 3.54e-01 | 83.6% | 57.3% |
| 3281968 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 42.0 | 3.97e-01 | 97.3% | 72.6% |
| 4941998 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.75e-01 | 76.7% | 96.0% |
| 3272573 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.52 | 37.0 | 3.69e-01 | 79.5% | 73.3% |
| 3487889 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.68e-01 | 98.6% | 75.8% |
| 4609498 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 36.0 | 3.56e-01 | 89.0% | 68.8% |
| 3189756 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.51 | 38.0 | 3.20e-01 | 83.6% | 45.3% |
| 3448327 | 4.1.1.150 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3123 | 0.51 | 38.0 | 3.87e-01 | 95.9% | 84.3% |
| 3194655 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 36.0 | 2.78e-01 | 74.0% | 39.9% |
| 3277066 | 223.1.1.8 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE | 0.50 | 41.0 | 2.83e-01 | 95.9% | 82.6% |
| 4002086 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 3.26e-01 | 89.0% | 59.3% |
| 4467756 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.50 | 38.0 | 3.50e-01 | 84.9% | 72.8% |