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IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015470
Arc-VirIMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015470
Identity
- Kingdom:
- archaea
Quality
70.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-136
Domain cluster:
rep: IMGVR_UViG_641509405_000001-641509405-641514410__D1-37_99-157
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 36.0 | 4.32e-01 | 74.6% | 78.0% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 40.0 | 4.39e-01 | 73.0% | 73.0% |
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 33.0 | 3.96e-01 | 75.4% | 76.8% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 35.0 | 4.23e-01 | 77.8% | 83.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.62 | 36.0 | 3.24e-01 | 78.6% | 41.9% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 37.0 | 4.34e-01 | 77.8% | 85.4% |
| 4c2mA09 | 3.30.70.2850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 44.0 | 3.92e-01 | 73.0% | 92.5% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 33.0 | 4.05e-01 | 77.8% | 83.5% |
| 4binA01 | 2.60.40.3500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 48.0 | 4.99e-01 | 94.4% | 88.8% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 38.0 | 4.31e-01 | 100.0% | 84.9% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 41.0 | 4.58e-01 | 93.7% | 93.7% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 32.0 | 3.91e-01 | 77.8% | 81.5% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 39.0 | 4.12e-01 | 77.0% | 75.0% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.59 | 36.0 | 4.39e-01 | 82.5% | 95.1% |
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.59 | 46.0 | 4.41e-01 | 83.3% | 92.5% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 32.0 | 3.92e-01 | 77.8% | 84.0% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.58 | 36.0 | 4.33e-01 | 83.3% | 98.7% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 32.0 | 3.85e-01 | 77.0% | 81.2% |
| 1y8oA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.56 | 48.0 | 4.33e-01 | 92.9% | 96.5% |
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.55 | 34.0 | 4.14e-01 | 84.9% | 100.0% |
| 3w1zC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 4.28e-01 | 81.0% | 90.8% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 32.0 | 3.97e-01 | 71.4% | 97.3% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 43.0 | 3.81e-01 | 86.5% | 90.1% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.53 | 38.0 | 3.77e-01 | 81.0% | 68.7% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 36.0 | 3.79e-01 | 88.9% | 75.0% |
| 3a0rA03 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 44.0 | 4.26e-01 | 91.3% | 97.9% |
| 5mw8A01 | 3.30.200.110 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe | 0.53 | 38.0 | 4.03e-01 | 75.4% | 94.7% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 26.0 | 2.84e-01 | 88.1% | 56.6% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.51 | 33.0 | 3.63e-01 | 97.6% | 78.3% |
| 1shsA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 4.23e-01 | 84.9% | 94.8% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5006953 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.69 | 45.0 | 4.97e-01 | 84.9% | 82.0% |
| 3266841 | 304.8.1.22 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT | 0.66 | 32.0 | 3.87e-01 | 74.6% | 68.2% |
| 5052687 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.65 | 34.0 | 4.32e-01 | 77.0% | 85.3% |
| 4951829 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.64 | 39.0 | 4.79e-01 | 83.3% | 100.0% |
| 4161001 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.64 | 43.0 | 4.86e-01 | 71.4% | 90.5% |
| 4011314 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.64 | 40.0 | 4.78e-01 | 83.3% | 97.5% |
| 3450997 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.64 | 41.0 | 4.48e-01 | 84.9% | 80.0% |
| 3670277 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.64 | 38.0 | 4.66e-01 | 84.9% | 98.7% |
| 4928824 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 36.0 | 4.06e-01 | 77.0% | 73.7% |
| 3460668 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.63 | 38.0 | 4.66e-01 | 84.1% | 100.0% |
| 3807514 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.62 | 38.0 | 2.98e-01 | 85.7% | 28.0% |
| None | — | 0.62 | 38.0 | 3.00e-01 | 85.7% | 28.5% | |
| 4955435 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 33.0 | 4.18e-01 | 76.2% | 86.7% |
| 5026974 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.62 | 49.0 | 4.11e-01 | 84.1% | 93.3% |
| 4214077 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.61 | 33.0 | 4.11e-01 | 76.2% | 86.7% |
| 3588197 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.61 | 32.0 | 3.83e-01 | 76.2% | 75.3% |
| 3639021 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.60 | 32.0 | 3.78e-01 | 75.4% | 74.1% |
| 3965651 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.60 | 31.0 | 3.88e-01 | 73.8% | 82.7% |
| 3706789 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.60 | 39.0 | 3.97e-01 | 100.0% | 66.4% |
| 4966205 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.60 | 42.0 | 4.56e-01 | 86.5% | 86.7% |
| 3668186 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 39.0 | 3.03e-01 | 73.8% | 30.9% |
| 3225101 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.59 | 34.0 | 3.47e-01 | 77.8% | 57.6% |
| 3969661 | 304.8.1.103 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26954 | 0.58 | 32.0 | 3.76e-01 | 74.6% | 77.6% |
| 4277035 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.58 | 36.0 | 4.34e-01 | 83.3% | 98.8% |
| 136544 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.57 | 32.0 | 3.81e-01 | 76.2% | 82.5% |
| 3608814 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 35.0 | 3.43e-01 | 77.8% | 54.3% |
| 5025438 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.56 | 37.0 | 4.13e-01 | 77.8% | 85.0% |
| 140759 | 873.1.1.6 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF2507 | 0.56 | 40.0 | 3.82e-01 | 83.3% | 63.4% |
| 4991492 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 38.0 | 3.93e-01 | 97.6% | 74.2% |
| 4403429 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.55 | 47.0 | 4.39e-01 | 92.1% | 96.1% |
| 5034617 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.55 | 38.0 | 4.35e-01 | 82.5% | 100.0% |
| 3589015 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.55 | 43.0 | 4.12e-01 | 83.3% | 96.6% |
| 4426301 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.55 | 46.0 | 4.42e-01 | 90.5% | 98.6% |
| 4943870 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 41.0 | 4.33e-01 | 85.7% | 86.1% |
| 4112011 | 310.3.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM | 0.54 | 34.0 | 3.97e-01 | 80.2% | 88.9% |
| 4554729 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.54 | 47.0 | 4.32e-01 | 93.7% | 93.1% |
| 4986440 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.53 | 39.0 | 3.67e-01 | 84.1% | 61.3% |
| 5063340 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.53 | 40.0 | 3.82e-01 | 82.5% | 69.4% |
| 5024203 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.52 | 31.0 | 3.50e-01 | 100.0% | 78.9% |
| 4529236 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.52 | 38.0 | 2.96e-01 | 76.2% | 79.3% |
| 5027561 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.52 | 38.0 | 3.85e-01 | 77.0% | 76.0% |
| 5067611 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.52 | 39.0 | 3.42e-01 | 78.6% | 72.0% |
| 3742062 | 883.1.1.23 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N | 0.51 | 37.0 | 2.95e-01 | 73.0% | 89.2% |
| 4102600 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.51 | 37.0 | 3.87e-01 | 78.6% | 82.6% |
| 5032480 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 32.0 | 3.48e-01 | 79.4% | 74.3% |
| 5004331 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.51 | 43.0 | 3.40e-01 | 90.5% | 49.4% |
| 4170997 | 304.48.1.39 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N | 0.51 | 40.0 | 3.44e-01 | 84.9% | 53.2% |
| 3250368 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.50 | 37.0 | 3.79e-01 | 77.8% | 80.0% |