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IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015473

Arc-Vir

IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015473

Identity

Kingdom:
archaea

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-103
PDB
Domain cluster: rep: JF917095__AEY69076.1__X__00026__D12-102
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.79 67.0 7.07e-01 100.0% 98.8%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 59.0 5.92e-01 100.0% 96.8%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.65 58.0 5.02e-01 98.9% 88.3%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.64 49.0 4.76e-01 100.0% 72.6%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 56.0 4.24e-01 100.0% 81.1%
2rc5B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 55.0 4.87e-01 100.0% 96.4%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 4.70e-01 100.0% 82.2%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.61 55.0 5.04e-01 98.9% 93.4%
1n0eA00 3.40.1550.20 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › Transcriptional regulator MraZ domain 0.61 54.0 4.72e-01 97.9% 80.9%
2dmkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.73e-01 100.0% 81.6%
3b83C00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.29e-01 100.0% 73.7%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.59 53.0 4.68e-01 100.0% 83.7%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.56 48.0 4.02e-01 100.0% 54.7%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.29e-01 95.7% 89.9%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 49.0 4.58e-01 100.0% 91.7%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 3.96e-01 84.0% 74.6%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 43.0 3.75e-01 100.0% 55.0%
3okxB00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.55 48.0 4.17e-01 97.9% 79.9%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 48.0 4.54e-01 100.0% 95.7%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.84e-01 100.0% 50.8%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.32e-01 100.0% 82.4%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.61e-01 100.0% 68.5%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 43.0 4.29e-01 100.0% 82.0%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.14e-01 100.0% 69.6%
2dbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.11e-01 100.0% 75.2%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.49e-01 100.0% 51.2%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.19e-01 95.7% 82.5%
4qhpA04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.53 45.0 4.41e-01 95.7% 86.1%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.58e-01 100.0% 65.0%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.51e-01 100.0% 51.9%
2wl1A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 45.0 3.68e-01 100.0% 72.3%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.08e-01 100.0% 92.5%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.40e-01 100.0% 48.8%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.41e-01 100.0% 53.0%
4bz4A00 2.60.120.1220 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.54e-01 100.0% 63.8%
7dodB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.58e-01 100.0% 82.9%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.01e-01 100.0% 77.7%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 38.0 3.59e-01 100.0% 67.3%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.73e-01 100.0% 70.3%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930010 1.1.7.141 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin 0.88 70.0 7.01e-01 100.0% 82.1%
5013669 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.88 74.0 7.83e-01 97.9% 97.6%
5013280 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.85 73.0 7.32e-01 97.9% 89.5%
4971294 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.84 60.0 6.81e-01 92.6% 98.6%
5012253 1.1.7.141 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin 0.83 75.0 6.71e-01 100.0% 72.0%
5012252 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.80 74.0 7.00e-01 100.0% 83.6%
5012903 1.1.7.141 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin 0.80 75.0 7.32e-01 100.0% 93.0%
3211350 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.68 62.0 5.28e-01 100.0% 95.3%
3248732 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 60.0 5.49e-01 98.9% 98.4%
3427279 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.64 58.0 4.65e-01 100.0% 58.3%
4436971 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.63 56.0 4.87e-01 97.9% 82.8%
4158735 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.63 57.0 4.95e-01 100.0% 84.3%
3623986 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 55.0 4.98e-01 100.0% 84.6%
3963810 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.62 54.0 4.72e-01 96.8% 83.6%
224013 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 55.0 4.04e-01 100.0% 37.8%
4662972 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.61 56.0 5.01e-01 100.0% 89.2%
4058682 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.61 55.0 4.85e-01 100.0% 80.7%
3164912 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.61 55.0 4.79e-01 100.0% 80.0%
4389342 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.61 53.0 4.69e-01 96.8% 83.6%
4478720 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.61 53.0 4.78e-01 96.8% 92.3%
4494566 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.61 53.0 4.64e-01 97.9% 82.1%
3495270 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 50.0 4.83e-01 100.0% 80.0%
162283 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 48.0 4.42e-01 100.0% 66.1%
3234092 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 53.0 4.97e-01 100.0% 93.0%
4064772 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.59 52.0 4.52e-01 100.0% 76.7%
3607639 10.12.1.9 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.59 47.0 3.13e-01 100.0% 21.4%
4059991 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.59 50.0 4.51e-01 95.7% 83.7%
3237337 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.59 53.0 4.75e-01 100.0% 90.8%
3680093 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 53.0 4.36e-01 100.0% 89.7%
3930059 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.57 42.0 4.04e-01 91.5% 66.4%
3501845 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 48.0 4.59e-01 100.0% 80.0%
3248740 10.32.1.17 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.57 46.0 3.91e-01 100.0% 50.6%
4982109 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 40.0 4.00e-01 92.6% 72.6%
3934566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 51.0 4.36e-01 100.0% 78.0%
3511265 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.50e-01 100.0% 78.2%
4016867 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 50.0 4.74e-01 100.0% 95.7%
5057681 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 4.29e-01 91.5% 83.3%
4669788 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 45.0 4.06e-01 100.0% 62.3%
4028174 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.56 50.0 4.47e-01 100.0% 85.2%
3414649 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 49.0 4.41e-01 100.0% 85.2%
3231820 5001.1.1.52 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › SID-1_RNA_chan 0.55 46.0 4.03e-01 100.0% 61.4%
3576210 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 47.0 4.35e-01 100.0% 74.2%
3744288 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 48.0 4.49e-01 100.0% 93.3%
3216253 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 49.0 4.43e-01 100.0% 93.1%
3490017 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 48.0 4.50e-01 100.0% 80.9%
1697855 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.54 48.0 3.61e-01 100.0% 68.5%
3828639 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 47.0 4.01e-01 100.0% 90.0%
4388794 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 48.0 4.34e-01 100.0% 73.8%
3855572 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 45.0 4.10e-01 100.0% 68.1%
4970082 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.81e-01 100.0% 54.5%
3909542 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.53 46.0 3.65e-01 100.0% 49.5%
4456175 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 47.0 3.62e-01 100.0% 47.7%
3188436 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 3.95e-01 100.0% 58.7%
3939695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.81e-01 97.9% 77.8%
5070709 11.1.1.237 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.53 40.0 3.95e-01 97.9% 75.2%
2439648 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.53 47.0 3.38e-01 100.0% 54.6%
4135250 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 47.0 3.19e-01 100.0% 33.7%
3217546 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 47.0 4.41e-01 100.0% 93.0%
5002190 304.7.1.21 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30773 0.52 25.0 2.82e-01 71.3% 54.3%
3304887 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 38.0 3.05e-01 100.0% 39.4%
3839282 11.1.1.449 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2393 0.52 46.0 4.54e-01 100.0% 99.0%
3270200 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 3.76e-01 100.0% 55.2%
3753133 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 46.0 3.15e-01 100.0% 32.1%
3222813 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.66e-01 97.9% 75.6%
3392540 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 45.0 3.64e-01 100.0% 51.1%
3501851 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 45.0 4.20e-01 100.0% 83.3%
3486375 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 2.91e-01 100.0% 21.1%
3399282 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.07e-01 100.0% 82.5%