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IMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015474
Arc-VirIMGVR_UViG_3300014911_000395-3300014911-Ga0180301_1000015474
Identity
- Kingdom:
- archaea
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00019__D3-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00226.37 best | DnaJ | 63.0 | 3.00e-17 | 96.2% | 81.0% |
D2
high
residues 95-146
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mqgA02 | 2.20.70.110 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.69 | 47.0 | 5.13e-01 | 88.5% | 94.9% |
| 1tpmA00 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.67 | 48.0 | 4.87e-01 | 100.0% | 82.0% |
| 1e88A03 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.66 | 44.0 | 4.70e-01 | 98.1% | 88.1% |
| 2q2gB02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.66 | 51.0 | 4.58e-01 | 90.4% | 68.4% |
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 48.0 | 4.22e-01 | 100.0% | 83.9% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.58 | 49.0 | 4.45e-01 | 96.2% | 71.0% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 46.0 | 3.92e-01 | 96.2% | 85.7% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.75e-01 | 92.3% | 79.8% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 48.0 | 4.00e-01 | 100.0% | 84.5% |
| 3ndaA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 37.0 | 2.90e-01 | 71.2% | 84.8% |
| 1yuaA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 43.0 | 4.23e-01 | 98.1% | 93.1% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 38.0 | 2.48e-01 | 86.5% | 46.7% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 39.0 | 3.84e-01 | 92.3% | 88.1% |
| 2d9vA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 40.0 | 3.33e-01 | 98.1% | 77.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604320 | 375.1.1.50 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 | 0.86 | 62.0 | 6.93e-01 | 76.9% | 100.0% |
| 5034626 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.85 | 61.0 | 6.79e-01 | 80.8% | 100.0% |
| 3310464 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.83 | 66.0 | 6.78e-01 | 88.5% | 98.0% |
| 3454406 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.81 | 67.0 | 6.80e-01 | 90.4% | 98.0% |
| 5040906 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 56.0 | 6.24e-01 | 75.0% | 100.0% |
| 4026244 | 4135.1.1.0 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like | 0.79 | 70.0 | 5.16e-01 | 100.0% | 45.9% |
| 5029687 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 60.0 | 6.33e-01 | 90.4% | 95.6% |
| 3343242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 55.0 | 5.98e-01 | 80.8% | 100.0% |
| 3906109 | 4135.1.1.0 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like | 0.77 | 63.0 | 4.62e-01 | 90.4% | 34.8% |
| 3832396 | 375.1.1.134 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cys_rich_CPXG | 0.77 | 68.0 | 5.91e-01 | 100.0% | 81.2% |
| 5046929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 60.0 | 6.11e-01 | 94.2% | 92.0% |
| 4991056 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.77 | 59.0 | 5.88e-01 | 90.4% | 81.8% |
| 3405175 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.76 | 61.0 | 5.36e-01 | 90.4% | 61.3% |
| 5016960 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 56.0 | 5.94e-01 | 88.5% | 91.1% |
| 1933336 | 375.1.1.50 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 | 0.75 | 54.0 | 5.78e-01 | 78.8% | 100.0% |
| 3599921 | 375.3.1.0 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger | 0.75 | 62.0 | 5.84e-01 | 94.2% | 93.8% |
| 4956278 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 58.0 | 5.88e-01 | 92.3% | 92.0% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 54.0 | 5.48e-01 | 92.3% | 92.0% |
| 5031010 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 52.0 | 4.79e-01 | 94.2% | 61.4% |
| 3414868 | 375.3.1.1 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL | 0.70 | 60.0 | 5.16e-01 | 100.0% | 63.5% |
| 4955635 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.67 | 54.0 | 5.14e-01 | 96.2% | 75.0% |
| 4551865 | 391.1.2.27 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Cys_knot | 0.59 | 45.0 | 3.36e-01 | 86.5% | 50.7% |
| 4962604 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.59 | 46.0 | 4.36e-01 | 90.4% | 96.9% |
| 5022323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.10e-01 | 82.7% | 100.0% |
| 3966871 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 42.0 | 3.37e-01 | 88.5% | 94.6% |
| 3521820 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 48.0 | 3.20e-01 | 100.0% | 21.7% |
| 3623941 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.52 | 39.0 | 4.12e-01 | 98.1% | 100.0% |
| 5038531 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.52 | 41.0 | 3.91e-01 | 90.4% | 92.3% |
| 4941652 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.52 | 42.0 | 3.32e-01 | 94.2% | 65.6% |
| 3594849 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 37.0 | 2.77e-01 | 86.5% | 29.4% |