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IMGVR_UViG_3300014911_000466-3300014911-Ga0180301_1000081925

Arc-Vir

IMGVR_UViG_3300014911_000466-3300014911-Ga0180301_1000081925

Quality

82.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.81 63.0 6.66e-01 98.2% 96.0%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.80 72.0 6.31e-01 98.2% 100.0%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.79 70.0 6.33e-01 100.0% 78.5%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.78 68.0 5.96e-01 98.2% 100.0%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.72 60.0 5.93e-01 100.0% 86.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 63.0 5.74e-01 100.0% 76.3%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.71 59.0 5.10e-01 91.2% 100.0%
3nrnA02 3.90.660.50 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.71 61.0 4.30e-01 96.5% 61.9%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.66 57.0 5.20e-01 100.0% 100.0%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.65 55.0 4.52e-01 100.0% 59.8%
3k7mX02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.64 55.0 3.83e-01 100.0% 42.7%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.64 55.0 3.74e-01 100.0% 37.6%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 54.0 4.85e-01 94.7% 100.0%
1j27A00 3.30.70.1120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like 0.64 55.0 4.66e-01 100.0% 94.9%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.62 52.0 3.85e-01 100.0% 39.5%
2jdjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 4.38e-01 100.0% 92.3%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.61 48.0 4.08e-01 94.7% 58.5%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.60 49.0 4.03e-01 100.0% 81.8%
1wr2A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 51.0 4.69e-01 100.0% 73.1%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 3.76e-01 73.7% 52.6%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.59 49.0 4.11e-01 100.0% 87.4%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 39.0 2.50e-01 71.9% 51.9%
1s6lA02 3.15.10.60 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase 0.58 47.0 3.70e-01 93.0% 41.9%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 4.16e-01 100.0% 86.7%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.27e-01 100.0% 45.0%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 4.42e-01 100.0% 97.6%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 46.0 4.06e-01 100.0% 90.6%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.57 47.0 3.99e-01 100.0% 55.2%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.14e-01 100.0% 96.8%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 45.0 3.61e-01 100.0% 63.1%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.74e-01 94.7% 86.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 45.0 3.93e-01 94.7% 57.6%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 37.0 2.79e-01 70.2% 99.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 46.0 3.37e-01 96.5% 90.4%
1wxaA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 3.73e-01 100.0% 62.1%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.54 40.0 3.87e-01 84.2% 100.0%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 39.0 2.94e-01 80.7% 84.0%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.53 45.0 4.57e-01 94.7% 98.2%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 43.0 3.85e-01 91.2% 94.0%
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.52 42.0 3.05e-01 94.7% 95.6%
3n01A00 3.30.70.2470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain 0.52 44.0 3.91e-01 98.2% 100.0%
2qvsB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.36e-01 96.5% 42.7%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.58e-01 94.7% 98.0%
3fz0D00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.51 45.0 2.79e-01 98.2% 53.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 65.0 6.88e-01 100.0% 98.0%
4030871 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.77 64.0 5.96e-01 100.0% 74.3%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 69.0 6.67e-01 100.0% 93.7%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 67.0 6.73e-01 96.5% 98.3%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.75 67.0 6.68e-01 96.5% 98.3%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.75 69.0 6.77e-01 100.0% 98.3%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.75 67.0 6.45e-01 100.0% 93.8%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 68.0 6.15e-01 100.0% 78.7%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.74 66.0 6.21e-01 100.0% 84.3%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 65.0 6.47e-01 100.0% 98.3%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.73 65.0 5.93e-01 100.0% 80.0%
3666791 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 59.0 6.30e-01 98.2% 100.0%
5051424 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.72 63.0 5.34e-01 98.2% 96.8%
4635441 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.69 59.0 5.11e-01 100.0% 93.7%
3287357 3115.3.1.0 a+b two layers › GP2-like › P56 › P56 0.69 59.0 5.88e-01 96.5% 100.0%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 62.0 6.18e-01 100.0% 96.6%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 53.0 5.51e-01 100.0% 100.0%
5041452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.68 58.0 4.32e-01 100.0% 44.4%
4527859 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.67 56.0 5.06e-01 94.7% 95.0%
5037200 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.66 56.0 4.23e-01 100.0% 44.8%
5023452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.65 56.0 4.24e-01 100.0% 46.2%
4130841 304.28.1.2 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.65 54.0 4.82e-01 100.0% 94.4%
5013605 304.165.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.65 57.0 4.18e-01 96.5% 99.3%
2843481 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.65 56.0 4.91e-01 98.2% 100.0%
87888 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.65 55.0 4.11e-01 100.0% 42.1%
3593924 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.64 54.0 4.34e-01 100.0% 53.3%
4958616 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.63 53.0 4.88e-01 94.7% 98.7%
4199730 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 53.0 4.46e-01 100.0% 56.2%
5000281 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.63 52.0 4.66e-01 96.5% 100.0%
3787712 3333.1.1.0 a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 0.63 54.0 4.02e-01 98.2% 62.0%
3721982 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.63 51.0 4.47e-01 96.5% 97.9%
4984422 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.62 53.0 4.28e-01 98.2% 69.6%
5027216 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.62 52.0 3.93e-01 100.0% 45.8%
5028429 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.61 54.0 4.77e-01 100.0% 100.0%
3188457 3335.1.1.0 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.61 47.0 4.30e-01 91.2% 100.0%
3223690 150.3.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.61 50.0 3.88e-01 100.0% 41.4%
3791935 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.60 50.0 4.14e-01 100.0% 92.1%
4929350 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.60 49.0 4.54e-01 98.2% 100.0%
5040784 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.60 47.0 4.96e-01 94.7% 100.0%
5051224 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.60 48.0 4.57e-01 93.0% 100.0%
3274364 560.1.1.0 few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain 0.60 43.0 4.54e-01 98.2% 95.9%
3512390 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.59 50.0 4.42e-01 96.5% 98.8%
5070107 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.59 47.0 4.41e-01 89.5% 100.0%
4955445 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.58 48.0 4.53e-01 94.7% 100.0%
5041711 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 49.0 4.62e-01 98.2% 100.0%
4975176 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 46.0 4.38e-01 94.7% 100.0%
3277566 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 47.0 4.36e-01 96.5% 98.7%
5044181 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.57 45.0 4.27e-01 94.7% 100.0%
3300115 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.57 46.0 3.89e-01 96.5% 76.2%
2794904 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.56 48.0 4.66e-01 100.0% 86.4%
2101210 304.51.1.5 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 0.55 45.0 4.01e-01 96.5% 98.9%
4957781 807.1.1.0 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) 0.55 43.0 4.54e-01 93.0% 100.0%
2557261 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.54 47.0 4.04e-01 100.0% 62.0%
3173836 304.4.1.72 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › PF29523 0.54 45.0 4.13e-01 98.2% 100.0%
3626906 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.29e-01 100.0% 39.4%
4978332 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.52 45.0 4.08e-01 100.0% 100.0%
3996298 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 44.0 3.97e-01 96.5% 98.8%
5049587 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.52 42.0 2.86e-01 98.2% 42.3%
3674231 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.51 41.0 2.91e-01 96.5% 59.8%
3451631 3525.1.1.1 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.50 35.0 3.23e-01 71.9% 98.6%