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IMGVR_UViG_3300014911_000475-3300014911-Ga0180301_100090382
Arc-VirIMGVR_UViG_3300014911_000475-3300014911-Ga0180301_100090382
Identity
- Kingdom:
- archaea
Quality
75.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-152
Domain cluster:
rep: IMGVR_UViG_3300000083_000021-3300000083-GBSSWat77CDRAFT_0009353__D49-211
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 42.0 | 5.26e-01 | 86.8% | 98.9% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.66 | 46.0 | 4.42e-01 | 88.2% | 61.4% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.66 | 52.0 | 4.43e-01 | 92.1% | 52.5% |
| 2y1rK00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 40.0 | 4.88e-01 | 87.5% | 97.8% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.64 | 42.0 | 4.56e-01 | 96.1% | 77.1% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.63 | 40.0 | 4.78e-01 | 94.7% | 98.9% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.62 | 56.0 | 4.83e-01 | 98.7% | 95.4% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.62 | 56.0 | 4.15e-01 | 96.7% | 70.8% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 4.31e-01 | 80.3% | 83.6% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.60 | 55.0 | 4.03e-01 | 98.0% | 73.2% |
| 1yrxC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.28e-01 | 90.8% | 90.4% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.58 | 38.0 | 4.52e-01 | 83.6% | 98.1% |
| 2iruA02 | 3.30.70.3300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 5.18e-01 | 96.1% | 100.0% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 51.0 | 4.68e-01 | 96.1% | 94.8% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.57 | 51.0 | 4.16e-01 | 98.0% | 56.7% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.56 | 51.0 | 3.94e-01 | 97.4% | 58.3% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 49.0 | 4.11e-01 | 96.1% | 93.6% |
| 5l6gA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.54 | 48.0 | 4.17e-01 | 96.7% | 96.5% |
| 1zr6A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.53 | 47.0 | 4.30e-01 | 96.7% | 100.0% |
| 2d3aA02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.53 | 41.0 | 3.44e-01 | 80.9% | 80.2% |
| 4dguA01 | 2.60.40.2680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 28.0 | 3.15e-01 | 95.4% | 65.2% |
| 1no5B00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 33.0 | 3.96e-01 | 71.1% | 96.1% |
| 4pvkA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.50 | 45.0 | 4.28e-01 | 96.1% | 84.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962169 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.67 | 51.0 | 4.41e-01 | 90.1% | 51.7% |
| 4667955 | 304.150.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain | 0.67 | 41.0 | 5.03e-01 | 88.8% | 97.9% |
| 7175 | 862.1.1.2 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 | 0.66 | 46.0 | 4.42e-01 | 88.2% | 61.4% |
| 4998612 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.64 | 53.0 | 4.55e-01 | 91.4% | 56.2% |
| 4552838 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.63 | 39.0 | 4.76e-01 | 86.8% | 98.9% |
| 3692641 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.63 | 57.0 | 4.61e-01 | 98.0% | 60.1% |
| 3368071 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 28.0 | 3.64e-01 | 86.2% | 74.1% |
| 3614371 | 862.1.1.7 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 | 0.62 | 57.0 | 5.29e-01 | 96.7% | 89.1% |
| 3717098 | 862.1.1.7 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 | 0.61 | 56.0 | 4.48e-01 | 98.0% | 55.9% |
| 4946875 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.61 | 53.0 | 4.36e-01 | 91.4% | 61.1% |
| 4997193 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.59 | 51.0 | 4.29e-01 | 91.4% | 61.2% |
| 4987159 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.59 | 51.0 | 4.22e-01 | 98.0% | 53.8% |
| 3386915 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.58 | 36.0 | 4.28e-01 | 92.1% | 92.0% |
| 5059790 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.58 | 52.0 | 3.79e-01 | 96.7% | 52.3% |
| None | — | 0.57 | 52.0 | 4.10e-01 | 98.0% | 50.6% | |
| 4554731 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.57 | 52.0 | 4.48e-01 | 98.0% | 64.3% |
| 4986859 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.56 | 51.0 | 4.08e-01 | 98.0% | 54.2% |
| 4960009 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.56 | 51.0 | 4.09e-01 | 98.0% | 55.4% |
| 4014867 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 48.0 | 4.09e-01 | 96.7% | 84.4% |
| 4428005 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.54 | 47.0 | 4.65e-01 | 96.1% | 89.4% |
| 4229813 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 48.0 | 3.93e-01 | 96.1% | 80.7% |
| 4075391 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.54 | 47.0 | 4.65e-01 | 96.7% | 91.3% |
| 4018178 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 48.0 | 3.93e-01 | 96.7% | 80.7% |
| 4089147 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.54 | 47.0 | 4.00e-01 | 97.4% | 83.1% |
| 4015638 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.53 | 47.0 | 4.04e-01 | 97.4% | 85.6% |
| 4018430 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 47.0 | 4.03e-01 | 95.4% | 82.1% |
| 3267289 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 46.0 | 3.86e-01 | 95.4% | 86.2% |
| 4018685 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 46.0 | 3.76e-01 | 96.1% | 77.2% |
| 3686788 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 46.0 | 3.76e-01 | 96.7% | 85.8% |
| 2721343 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 46.0 | 3.87e-01 | 96.7% | 83.6% |
| 4680385 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 46.0 | 3.92e-01 | 98.0% | 82.3% |
| 4271986 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.52 | 46.0 | 3.73e-01 | 96.7% | 84.7% |
| 3235469 | 309.1.1.8 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M | 0.52 | 36.0 | 3.13e-01 | 71.7% | 93.9% |
| 5074555 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.52 | 37.0 | 4.19e-01 | 91.4% | 98.3% |
| 4567381 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.52 | 46.0 | 3.11e-01 | 96.7% | 44.0% |
| 4022887 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 43.0 | 3.63e-01 | 92.1% | 77.3% |
| 5052911 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 47.0 | 3.29e-01 | 99.3% | 92.4% |