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IMGVR_UViG_3300014911_000575-3300014911-Ga0180301_100074668
Arc-VirIMGVR_UViG_3300014911_000575-3300014911-Ga0180301_100074668
Identity
- Kingdom:
- archaea
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-53
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lo0A00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.79 | 52.0 | 5.55e-01 | 71.7% | 80.0% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 59.0 | 5.18e-01 | 86.8% | 63.2% |
| 1kl7A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 53.0 | 3.36e-01 | 77.4% | 50.6% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.73 | 50.0 | 4.07e-01 | 73.6% | 37.5% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 49.0 | 4.77e-01 | 71.7% | 64.4% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.71 | 38.0 | 3.38e-01 | 94.3% | 39.4% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.68 | 57.0 | 4.33e-01 | 94.3% | 65.1% |
| 1wj7A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 53.0 | 5.15e-01 | 88.7% | 83.3% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 55.0 | 5.06e-01 | 90.6% | 70.1% |
| 2kebA00 | 1.10.8.530 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain | 0.66 | 54.0 | 4.84e-01 | 94.3% | 76.9% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.65 | 52.0 | 4.46e-01 | 98.1% | 68.0% |
| 1vb3A01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.64 | 40.0 | 3.48e-01 | 79.2% | 40.7% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 54.0 | 4.45e-01 | 98.1% | 71.4% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.62 | 49.0 | 3.80e-01 | 86.8% | 52.5% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.99e-01 | 71.7% | 85.5% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.75e-01 | 71.7% | 73.2% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 47.0 | 4.54e-01 | 86.8% | 76.7% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.60 | 51.0 | 4.34e-01 | 100.0% | 95.6% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.60 | 46.0 | 4.17e-01 | 88.7% | 97.5% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 42.0 | 4.17e-01 | 81.1% | 73.7% |
| 1n3kA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 43.0 | 3.41e-01 | 86.8% | 54.6% |
| 2fh0A00 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.58 | 45.0 | 4.12e-01 | 96.2% | 71.6% |
| 4zbwA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 43.0 | 3.66e-01 | 86.8% | 85.4% |
| 1otrA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 41.0 | 4.20e-01 | 84.9% | 87.8% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 39.0 | 2.81e-01 | 75.5% | 63.5% |
| 1r71A02 | 6.10.250.140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 40.0 | 3.96e-01 | 88.7% | 77.6% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 3.63e-01 | 96.2% | 71.7% |
| 1ignA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 38.0 | 3.20e-01 | 73.6% | 96.8% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 40.0 | 3.84e-01 | 81.1% | 81.2% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 40.0 | 3.59e-01 | 96.2% | 60.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3183328 | 103.12.1.13 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2015 | 0.80 | 69.0 | 6.37e-01 | 92.5% | 86.2% |
| 3404381 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.74 | 51.0 | 5.44e-01 | 75.5% | 84.4% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.73 | 50.0 | 4.48e-01 | 71.7% | 50.7% |
| 5080761 | 103.12.1.14 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 | 0.73 | 53.0 | 5.00e-01 | 77.4% | 73.4% |
| 3503648 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.72 | 49.0 | 4.70e-01 | 73.6% | 61.7% |
| 4033799 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.71 | 52.0 | 5.30e-01 | 79.2% | 98.0% |
| 3734131 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.70 | 51.0 | 4.75e-01 | 77.4% | 100.0% |
| 5058284 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.70 | 52.0 | 3.51e-01 | 84.9% | 21.0% |
| 4998572 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 49.0 | 4.19e-01 | 75.5% | 94.1% |
| 4601702 | 541.1.1.1 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › RIIa | 0.68 | 46.0 | 4.65e-01 | 73.6% | 72.7% |
| 5060625 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.65 | 51.0 | 3.40e-01 | 86.8% | 23.7% |
| 3515471 | 4021.1.1.1 ↗ | alpha arrays › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › SDH_alpha | 0.64 | 53.0 | 3.43e-01 | 98.1% | 74.4% |
| 5011601 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 50.0 | 4.51e-01 | 92.5% | 62.5% |
| 3698039 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.64 | 43.0 | 3.18e-01 | 92.5% | 28.7% |
| 4860742 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.63 | 43.0 | 4.21e-01 | 71.7% | 67.2% |
| 4966359 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 49.0 | 4.62e-01 | 92.5% | 72.9% |
| 3970007 | 3502.1.1.0 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein | 0.62 | 44.0 | 4.02e-01 | 77.4% | 92.0% |
| 3970066 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 3.74e-01 | 88.7% | 40.7% |
| 3602858 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.62 | 49.0 | 4.06e-01 | 86.8% | 90.5% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.60 | 42.0 | 3.94e-01 | 73.6% | 80.3% |
| 3317016 | 150.5.1.102 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PF28483 | 0.59 | 43.0 | 3.90e-01 | 75.5% | 69.1% |
| 3781420 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 4.16e-01 | 84.9% | 77.1% |
| 4976767 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.57 | 47.0 | 3.16e-01 | 100.0% | 29.8% |
| 3357244 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 44.0 | 3.54e-01 | 98.1% | 44.8% |