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IMGVR_UViG_3300014913_000201-3300014913-Ga0164310_100033021
Arc-VirIMGVR_UViG_3300014913_000201-3300014913-Ga0164310_100033021
Identity
- Kingdom:
- archaea
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-118
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v0oB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 51.0 | 3.82e-01 | 72.9% | 76.8% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 40.0 | 4.14e-01 | 78.8% | 62.8% |
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.63 | 53.0 | 4.11e-01 | 90.7% | 77.5% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.63 | 42.0 | 4.23e-01 | 70.3% | 67.5% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 35.0 | 3.19e-01 | 79.7% | 41.3% |
| 2p61A00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.60 | 37.0 | 3.82e-01 | 90.7% | 63.2% |
| 5lnkJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.60 | 36.0 | 3.19e-01 | 92.4% | 40.8% |
| 4h3tA02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.59 | 53.0 | 5.02e-01 | 97.5% | 85.1% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 37.0 | 3.88e-01 | 79.7% | 69.5% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 39.0 | 3.79e-01 | 91.5% | 60.4% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.58 | 37.0 | 3.60e-01 | 90.7% | 57.1% |
| 2m6bA00 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.56 | 39.0 | 3.64e-01 | 72.9% | 92.0% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.55 | 43.0 | 3.50e-01 | 81.4% | 79.4% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 41.0 | 3.69e-01 | 83.1% | 56.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4663621 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.64 | 47.0 | 4.55e-01 | 76.3% | 70.0% |
| 3920960 | 604.8.1.2 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Mitofilin | 0.62 | 44.0 | 4.29e-01 | 86.4% | 66.9% |
| 3770290 | 4177.1.1.41 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › EVC2_like | 0.60 | 54.0 | 4.60e-01 | 100.0% | 85.6% |
| 3770 | 601.29.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like › DUF327 | 0.60 | 37.0 | 3.83e-01 | 90.7% | 63.7% |
| 3656892 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.60 | 37.0 | 3.64e-01 | 71.2% | 56.2% |
| 4024396 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.59 | 41.0 | 3.97e-01 | 76.3% | 63.0% |
| 3386043 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.58 | 41.0 | 3.89e-01 | 83.9% | 59.3% |
| 3246117 | 1075.4.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 | 0.58 | 50.0 | 3.53e-01 | 92.4% | 51.4% |
| 3491873 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.58 | 43.0 | 4.73e-01 | 89.8% | 98.9% |
| 3291547 | 601.1.1.84 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF350 | 0.58 | 49.0 | 4.61e-01 | 94.1% | 75.2% |
| 3390135 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.58 | 49.0 | 3.14e-01 | 92.4% | 32.7% |
| 3348566 | 3291.1.1.106 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Chloroplast_duf | 0.57 | 45.0 | 4.27e-01 | 83.1% | 82.1% |
| 4961158 | 5076.2.1.3 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 | 0.57 | 49.0 | 3.98e-01 | 93.2% | 52.3% |
| 4020278 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.57 | 46.0 | 3.35e-01 | 88.1% | 37.3% |
| 5001019 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.56 | 45.0 | 4.02e-01 | 85.6% | 73.5% |
| 4606689 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.54 | 47.0 | 4.00e-01 | 94.9% | 89.2% |
| 3586028 | 1075.4.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 | 0.54 | 45.0 | 3.65e-01 | 90.7% | 55.7% |
| 3973569 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 32.0 | 3.27e-01 | 90.7% | 59.1% |
| 3396796 | 601.1.1.43 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A | 0.53 | 34.0 | 3.45e-01 | 90.7% | 63.3% |
| 3875375 | 192.7.1.36 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF28673 | 0.52 | 42.0 | 3.93e-01 | 88.1% | 87.3% |
| 3614617 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.50 | 41.0 | 3.91e-01 | 90.7% | 86.2% |
D2
medium
residues 119-201
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.56 | 44.0 | 3.49e-01 | 84.3% | 68.6% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 41.0 | 4.12e-01 | 79.5% | 78.0% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.55 | 42.0 | 3.24e-01 | 81.9% | 73.3% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 39.0 | 3.66e-01 | 75.9% | 97.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595968 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.60 | 43.0 | 4.43e-01 | 75.9% | 83.7% |
| 1206501 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.54 | 39.0 | 3.66e-01 | 75.9% | 97.0% |
D3
medium
residues 202-334
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.52 | 39.0 | 3.86e-01 | 78.2% | 73.4% |
| 3kxeA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.51 | 32.0 | 3.77e-01 | 82.7% | 90.4% |
D4
medium
residues 335-450
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vepA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 41.0 | 3.23e-01 | 70.7% | 71.8% |
| 3kmiA00 | 1.20.120.940 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Putative aromatic acid exporter, C-terminal domain | 0.58 | 42.0 | 3.69e-01 | 74.1% | 98.3% |
| 3lpzA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 43.0 | 3.15e-01 | 83.6% | 41.1% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 37.0 | 3.49e-01 | 73.3% | 77.8% |
| 4nq0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 41.0 | 3.20e-01 | 82.8% | 88.6% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.52 | 41.0 | 3.42e-01 | 82.8% | 75.2% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 37.0 | 3.13e-01 | 74.1% | 100.0% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.51 | 35.0 | 3.62e-01 | 70.7% | 77.7% |
| 5ctrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 35.0 | 2.60e-01 | 71.6% | 63.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3671483 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.57 | 41.0 | 3.50e-01 | 74.1% | 76.8% |
| 3742887 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 39.0 | 3.92e-01 | 71.6% | 100.0% |
| 3443161 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.56 | 39.0 | 2.74e-01 | 72.4% | 50.5% |
| 3994425 | 109.4.1.1312 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30475 | 0.55 | 40.0 | 3.73e-01 | 74.1% | 91.4% |
| 3238294 | 109.4.1.1640 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29127, PF29567 | 0.55 | 47.0 | 3.47e-01 | 94.8% | 68.4% |
| 3648990 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.55 | 38.0 | 2.57e-01 | 72.4% | 32.6% |
| 3742246 | 109.4.1.1511 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, M-HEAT_ATR | 0.54 | 45.0 | 3.00e-01 | 91.4% | 42.7% |
| 3645661 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.53 | 44.0 | 3.18e-01 | 92.2% | 70.4% |
| 3575678 | 109.4.1.917 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N | 0.53 | 46.0 | 3.68e-01 | 98.3% | 92.9% |
| 3462201 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.52 | 38.0 | 2.71e-01 | 74.1% | 55.4% |
| 3671662 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.52 | 42.0 | 2.55e-01 | 87.1% | 46.6% |
| 3807967 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.51 | 37.0 | 3.02e-01 | 75.0% | 82.6% |
D5
medium
residues 451-511
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 3.88e-01 | 90.2% | 81.6% |
| 1fokA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.57e-01 | 88.5% | 59.8% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.53e-01 | 95.1% | 62.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166133 | 101.1.2.103 ↗ | alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2 | 0.58 | 44.0 | 4.19e-01 | 80.3% | 81.4% |
| 3263379 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.52 | 43.0 | 3.19e-01 | 100.0% | 34.5% |
| 5067549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 4.06e-01 | 95.1% | 95.4% |