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IMGVR_UViG_3300014913_000898-3300014913-Ga0164310_100073201

Arc-Vir

IMGVR_UViG_3300014913_000898-3300014913-Ga0164310_100073201

Identity

Kingdom:
archaea

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 91-146
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.72 52.0 4.90e-01 76.8% 64.7%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.71 55.0 4.52e-01 85.7% 83.0%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.71 53.0 4.62e-01 83.9% 51.7%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.04e-01 75.0% 59.6%
3pm6A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 55.0 3.54e-01 96.4% 51.6%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.64 45.0 3.36e-01 78.6% 29.5%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.63 48.0 4.52e-01 82.1% 72.1%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.63 50.0 4.90e-01 96.4% 83.1%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.62 51.0 4.48e-01 96.4% 60.4%
3rylA01 1.20.120.1210 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 47.0 3.66e-01 92.9% 35.0%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 40.0 3.52e-01 80.4% 45.1%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.61 49.0 4.50e-01 94.6% 66.7%
4dhxB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.60 52.0 4.49e-01 100.0% 61.5%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 49.0 3.79e-01 100.0% 42.6%
3crvA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.12e-01 94.6% 55.3%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.13e-01 71.4% 47.6%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.53 43.0 3.96e-01 96.4% 100.0%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 43.0 4.22e-01 96.4% 95.2%
3fkjA02 1.10.10.2240 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 36.0 3.45e-01 78.6% 65.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703453 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.74 64.0 4.23e-01 98.2% 35.6%
3587991 2002.1.1.50 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.69 61.0 3.86e-01 100.0% 67.8%
5003589 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.68 56.0 4.97e-01 94.6% 67.1%
5059062 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.66 41.0 3.88e-01 83.9% 50.0%
4992540 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 49.0 4.54e-01 80.4% 70.0%
3347379 3470.1.1.26 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.64 53.0 5.14e-01 98.2% 89.2%
4102879 604.12.1.76 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA 0.62 51.0 4.57e-01 91.1% 65.0%
3954514 604.5.1.61 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF30641 0.62 45.0 3.74e-01 76.8% 60.2%
3331967 397.7.1.3 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › DUF842 0.61 47.0 4.94e-01 91.1% 98.0%
5024245 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.60 45.0 3.64e-01 82.1% 50.0%
5013274 5011.1.1.0 ↗ extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa 0.59 53.0 4.57e-01 98.2% 67.1%
3740778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 4.39e-01 94.6% 69.3%
3497167 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.59 47.0 3.24e-01 89.3% 25.0%
3622097 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.55 46.0 3.10e-01 91.1% 86.3%
140412 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.53 35.0 3.24e-01 71.4% 52.7%
3275510 109.4.1.271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR 0.52 36.0 2.69e-01 75.0% 26.5%