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IMGVR_UViG_3300014913_000948-3300014913-Ga0164310_100077163

Arc-Vir

IMGVR_UViG_3300014913_000948-3300014913-Ga0164310_100077163

Identity

Kingdom:
archaea

Quality

86.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mekA02 6.10.140.2220 Special › Helix non-globular › Helix Hairpins › 0.79 54.0 5.58e-01 78.8% 75.5%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.79 60.0 5.68e-01 82.7% 71.0%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.75 61.0 3.47e-01 88.5% 10.6%
3o58V00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.74 55.0 5.35e-01 82.7% 74.6%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.73 59.0 3.36e-01 88.5% 10.8%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 39.0 2.83e-01 100.0% 22.6%
8bypX01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.61 43.0 2.50e-01 100.0% 9.4%
4gczB03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 46.0 3.25e-01 82.7% 46.0%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.58 44.0 4.41e-01 92.3% 81.8%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 43.0 4.02e-01 84.6% 76.5%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.74e-01 100.0% 95.7%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 44.0 3.32e-01 88.5% 43.8%
1x4dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 40.0 3.31e-01 84.6% 42.2%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.27e-01 82.7% 71.2%
8balC01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 46.0 2.82e-01 100.0% 43.6%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 39.0 2.95e-01 82.7% 75.4%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.51 41.0 2.84e-01 92.3% 63.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 40.0 3.26e-01 84.6% 51.5%
3s6pG00 6.10.140.1660 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 3.80e-01 90.4% 97.2%
5aedA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 3.51e-01 96.2% 97.9%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 3.25e-01 90.4% 50.9%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.50 42.0 3.02e-01 100.0% 60.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036295 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.85 66.0 6.52e-01 82.7% 80.0%
5007944 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.84 60.0 6.71e-01 78.8% 97.5%
3749973 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.84 62.0 6.66e-01 78.8% 95.6%
4942722 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.84 64.0 5.43e-01 80.8% 53.8%
3224881 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.83 64.0 4.65e-01 82.7% 31.9%
3918443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 65.0 6.91e-01 88.5% 95.6%
3499880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 63.0 4.70e-01 82.7% 34.4%
3731209 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.82 63.0 5.03e-01 82.7% 43.0%
3919489 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 60.0 6.69e-01 80.8% 100.0%
5028122 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.82 61.0 4.44e-01 82.7% 31.5%
3907983 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.82 66.0 7.03e-01 96.2% 100.0%
4670027 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.82 63.0 5.65e-01 82.7% 62.9%
4943801 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 59.0 6.64e-01 80.8% 100.0%
4025931 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.81 62.0 4.59e-01 82.7% 33.8%
3361724 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.81 64.0 5.26e-01 84.6% 50.0%
4023822 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.81 62.0 4.41e-01 82.7% 29.3%
3907976 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.81 63.0 6.70e-01 86.5% 95.6%
4991423 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 71.0 7.24e-01 100.0% 100.0%
3908093 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.81 61.0 6.46e-01 84.6% 93.3%
2878975 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.80 63.0 5.52e-01 86.5% 57.9%
5011221 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.80 58.0 6.36e-01 82.7% 100.0%
4926891 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.80 62.0 6.61e-01 92.3% 97.8%
3541608 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.80 62.0 6.64e-01 96.2% 97.8%
3559714 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.79 63.0 6.68e-01 88.5% 97.8%
3845449 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.78 60.0 6.35e-01 94.2% 95.6%
3878134 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.78 68.0 6.66e-01 98.1% 89.1%
5024734 375.1.1.323 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Arc_trans_TRASH 0.78 55.0 6.07e-01 84.6% 97.5%
1832152 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.77 59.0 5.56e-01 82.7% 71.0%
3394526 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.75 59.0 6.31e-01 84.6% 100.0%
4961835 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.75 61.0 5.44e-01 90.4% 63.0%
3985 150.1.2.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase 0.75 61.0 3.47e-01 88.5% 10.6%
4562058 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.75 57.0 6.02e-01 84.6% 95.6%
5041082 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 59.0 6.03e-01 88.5% 90.0%
3787894 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.73 66.0 3.93e-01 100.0% 37.8%
4957710 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.72 56.0 5.91e-01 94.2% 100.0%
4938674 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 54.0 5.19e-01 82.7% 86.7%
None — 0.72 60.0 3.44e-01 92.3% 10.6%
3483313 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 55.0 5.44e-01 84.6% 90.9%
4669982 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 55.0 5.58e-01 94.2% 90.0%
5047375 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.68 54.0 5.35e-01 90.4% 83.6%
3890958 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.68 55.0 3.32e-01 94.2% 13.1%
3576004 859.1.1.3 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 0.67 52.0 3.46e-01 86.5% 28.2%
3270568 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.66 59.0 3.62e-01 100.0% 29.8%
4940846 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 50.0 4.84e-01 86.5% 100.0%
3221156 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 45.0 4.49e-01 90.4% 74.5%
4022955 3559.1.1.50 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › PF28561 0.63 44.0 3.05e-01 94.2% 23.0%
8198 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.61 42.0 4.33e-01 88.5% 81.6%
5032367 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 49.0 4.13e-01 96.2% 78.0%
3790267 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 44.0 4.12e-01 92.3% 61.3%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.59 46.0 4.51e-01 90.4% 80.4%
3632002 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.58 40.0 4.26e-01 82.7% 84.4%
3268019 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 45.0 4.34e-01 94.2% 75.4%
3561887 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.58 45.0 3.99e-01 92.3% 69.4%
4945028 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 45.0 4.14e-01 96.2% 74.3%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.98e-01 88.5% 98.7%
4298719 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.55 45.0 3.77e-01 96.2% 57.0%
3224677 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 43.0 4.22e-01 94.2% 85.0%
3737200 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.51 43.0 4.18e-01 96.2% 98.3%
3286277 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 41.0 2.77e-01 86.5% 26.7%