←Back to structures

IMGVR_UViG_3300014913_001133-3300014913-Ga0164310_100156936

Arc-Vir

IMGVR_UViG_3300014913_001133-3300014913-Ga0164310_100156936

Identity

Kingdom:
archaea

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtdA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.69 54.0 5.04e-01 89.6% 88.9%
4lmyA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.67 54.0 5.21e-01 89.6% 96.3%
2fe3A02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.66 52.0 4.97e-01 89.6% 96.5%
2xigA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.65 48.0 4.69e-01 83.3% 96.4%
1bmlC03 3.10.20.150 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 45.0 3.73e-01 79.2% 92.8%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.57 49.0 3.91e-01 95.8% 80.0%
6x6uA01 3.60.9.10 Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain 0.56 42.0 2.84e-01 85.4% 53.6%
3i57A01 3.10.20.470 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 40.0 3.55e-01 79.2% 96.0%
4bjyA02 3.30.9.30 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.54 46.0 2.98e-01 97.9% 73.3%
2bycB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 2.72e-01 72.9% 69.7%
3tixB01 2.40.290.20 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.53 45.0 3.24e-01 100.0% 72.3%
3lyyA00 2.60.40.4300 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.16e-01 89.6% 94.1%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 38.0 3.54e-01 85.4% 86.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947178 239.2.1.1 ↗ beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.71 50.0 3.62e-01 75.0% 59.2%
4505043 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 52.0 3.78e-01 89.6% 35.9%
4583269 239.2.1.1 ↗ beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.66 45.0 3.07e-01 72.9% 30.6%
5019594 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.61 51.0 4.58e-01 91.7% 96.9%
3262814 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 54.0 4.22e-01 95.8% 90.5%
5045021 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.60 51.0 4.75e-01 93.8% 95.0%
5035867 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 52.0 4.95e-01 93.8% 98.2%
4934433 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 52.0 4.93e-01 93.8% 98.2%
3478701 221.1.1.72 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TECR_N 0.59 47.0 3.96e-01 87.5% 100.0%
3924460 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 3.64e-01 87.5% 73.0%
1759949 221.15.1.0 ↗ a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.58 46.0 4.16e-01 89.6% 95.5%
4968500 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.57 52.0 4.72e-01 100.0% 88.9%
4964644 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.57 49.0 4.70e-01 95.8% 98.2%
3512233 221.1.1.72 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TECR_N 0.56 49.0 4.12e-01 100.0% 98.8%
3805030 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 49.0 4.49e-01 100.0% 90.8%
3852128 4.6.1.5 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.56 47.0 3.89e-01 93.8% 68.2%
4384956 4.6.1.5 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.56 44.0 3.88e-01 87.5% 82.9%
3585204 4.6.1.5 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.56 46.0 3.86e-01 93.8% 71.8%
4144572 4.6.1.5 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.55 46.0 3.85e-01 93.8% 80.0%
3573551 4.6.1.5 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.55 47.0 3.86e-01 93.8% 65.9%
4273919 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 46.0 3.89e-01 100.0% 92.2%
3589296 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 2.94e-01 87.5% 55.7%
3967756 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.54 45.0 4.06e-01 95.8% 95.7%
5049872 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.54 47.0 4.17e-01 100.0% 94.3%
4027082 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 41.0 3.34e-01 85.4% 92.6%
5044292 375.11.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ 0.52 32.0 3.03e-01 83.3% 44.6%
3936154 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 44.0 3.68e-01 100.0% 94.4%
1101007 3114.1.1.2 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 0.51 40.0 3.51e-01 91.7% 96.2%