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IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003820

Arc-Vir

IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003820

Identity

Kingdom:
archaea

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 50.0 3.88e-01 100.0% 31.3%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 61.0 5.32e-01 98.2% 80.5%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.59 41.0 3.55e-01 100.0% 44.2%
4hfvA02 6.10.280.170 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system 0.58 46.0 4.39e-01 100.0% 74.6%
5c50B00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.58 46.0 3.28e-01 91.1% 79.5%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 48.0 3.73e-01 98.2% 75.4%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 48.0 3.46e-01 98.2% 53.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.56 49.0 4.04e-01 100.0% 67.6%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 41.0 2.92e-01 100.0% 26.6%
1w07A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 46.0 3.34e-01 100.0% 33.3%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.54 46.0 4.13e-01 100.0% 89.0%
1pj5A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.03e-01 100.0% 53.3%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 45.0 3.47e-01 98.2% 42.7%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.52 36.0 3.11e-01 83.9% 41.3%
4kyqA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 40.0 2.89e-01 92.9% 66.5%
6f7hA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 46.0 3.00e-01 100.0% 35.9%
1eijA00 1.10.8.140 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain 0.52 33.0 3.15e-01 100.0% 51.4%
1ornA02 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.51 45.0 3.70e-01 98.2% 92.0%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 42.0 3.96e-01 91.1% 77.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3477797 101.1.2.125 ↗ alpha arrays › HTH › HTH › winged helix domain › ELL 0.72 40.0 3.36e-01 96.4% 33.3%
4932281 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.69 58.0 4.99e-01 100.0% 63.2%
4417099 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.68 57.0 4.86e-01 100.0% 60.0%
4789617 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.66 57.0 4.86e-01 100.0% 72.3%
3823306 148.1.1.12 ↗ alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.63 43.0 3.40e-01 98.2% 34.8%
4194677 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.62 41.0 3.68e-01 100.0% 48.1%
3915965 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 46.0 2.97e-01 85.7% 81.5%
4997823 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.59 50.0 3.87e-01 98.2% 74.1%
3693314 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 52.0 3.20e-01 100.0% 18.2%
3726030 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.57 41.0 3.41e-01 76.8% 58.1%
3208504 109.4.1.101 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CENP-I 0.55 48.0 2.70e-01 100.0% 7.8%
1196548 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.52 40.0 3.80e-01 83.9% 93.9%
3686218 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.24e-01 83.9% 46.4%
3632555 109.4.1.101 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CENP-I 0.52 47.0 2.71e-01 100.0% 11.7%
2966880 149.1.1.0 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.51 41.0 2.53e-01 96.4% 50.6%
3473483 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 40.0 3.67e-01 87.5% 76.0%