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IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003842
Arc-VirIMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003842
Identity
- Kingdom:
- archaea
Quality
66.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-52
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.69 | 45.0 | 3.20e-01 | 100.0% | 21.4% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.67 | 43.0 | 3.43e-01 | 100.0% | 32.6% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.67 | 44.0 | 3.99e-01 | 100.0% | 49.2% |
| 6pgwA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.66 | 39.0 | 2.91e-01 | 82.2% | 25.5% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 52.0 | 4.06e-01 | 93.3% | 59.2% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 42.0 | 2.60e-01 | 100.0% | 10.7% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.63 | 49.0 | 3.01e-01 | 88.9% | 17.7% |
| 3qfmA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.61 | 51.0 | 3.23e-01 | 100.0% | 82.9% |
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 40.0 | 3.30e-01 | 100.0% | 35.7% |
| 2iayA00 | 3.30.1820.10 | Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like | 0.60 | 44.0 | 3.41e-01 | 82.2% | 86.0% |
| 2vz8A04 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.60 | 50.0 | 3.18e-01 | 100.0% | 29.5% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.59 | 45.0 | 3.50e-01 | 88.9% | 71.1% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 37.0 | 3.32e-01 | 100.0% | 42.4% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.58 | 48.0 | 3.94e-01 | 97.8% | 82.2% |
| 1wthD01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 47.0 | 3.66e-01 | 95.6% | 57.5% |
| 6ka3A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 44.0 | 3.22e-01 | 93.3% | 87.8% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 43.0 | 3.08e-01 | 100.0% | 26.4% |
| 3eshA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 44.0 | 2.86e-01 | 100.0% | 92.7% |
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.56 | 36.0 | 3.71e-01 | 100.0% | 65.9% |
| 1oxxK03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 47.0 | 4.74e-01 | 100.0% | 95.6% |
| 2kcdA00 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.55 | 47.0 | 3.52e-01 | 100.0% | 39.2% |
| 4hrzB00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 41.0 | 3.10e-01 | 84.4% | 71.5% |
| 2yx6D01 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.55 | 43.0 | 3.41e-01 | 100.0% | 40.2% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.54 | 44.0 | 3.28e-01 | 100.0% | 84.4% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 40.0 | 3.38e-01 | 93.3% | 64.9% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.53 | 41.0 | 3.16e-01 | 86.7% | 66.1% |
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.53 | 44.0 | 3.43e-01 | 100.0% | 82.5% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 42.0 | 3.64e-01 | 100.0% | 58.3% |
| 2o0pA00 | 3.20.170.20 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 | 0.51 | 42.0 | 3.28e-01 | 100.0% | 81.6% |
| 1xebA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.04e-01 | 100.0% | 40.3% |
| 1g29103 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 44.0 | 3.91e-01 | 100.0% | 84.6% |
| 3qdfA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.50 | 33.0 | 3.16e-01 | 97.8% | 51.7% |
| 2b5eA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 43.0 | 3.39e-01 | 100.0% | 56.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014014 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.67 | 58.0 | 3.37e-01 | 100.0% | 12.3% |
| 3392320 | 304.166.1.9 ↗ | a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 | 0.67 | 46.0 | 3.46e-01 | 73.3% | 65.2% |
| 3574358 | 220.1.1.18 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB | 0.67 | 38.0 | 2.85e-01 | 100.0% | 22.9% |
| 5063401 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.67 | 55.0 | 4.91e-01 | 97.8% | 84.1% |
| 4028997 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 42.0 | 3.39e-01 | 100.0% | 32.2% |
| 5003338 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 49.0 | 3.79e-01 | 86.7% | 75.2% |
| 3804385 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 40.0 | 3.74e-01 | 100.0% | 48.3% |
| 4025105 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.63 | 43.0 | 2.73e-01 | 100.0% | 14.2% |
| None | — | 0.62 | 52.0 | 3.17e-01 | 100.0% | 18.7% | |
| 3982925 | 2004.1.1.262 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2813 | 0.61 | 52.0 | 3.10e-01 | 100.0% | 16.0% |
| 3236014 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.61 | 41.0 | 2.47e-01 | 100.0% | 9.5% |
| 3558036 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.60 | 50.0 | 3.59e-01 | 100.0% | 50.0% |
| 3280874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 50.0 | 2.99e-01 | 100.0% | 13.7% |
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.60 | 47.0 | 3.62e-01 | 93.3% | 80.0% |
| 3741246 | 3343.1.1.1 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal | 0.59 | 49.0 | 2.77e-01 | 100.0% | 9.6% |
| 4049807 | 11.1.4.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SOP4 | 0.59 | 44.0 | 3.14e-01 | 100.0% | 25.3% |
| 682 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.58 | 39.0 | 3.21e-01 | 71.1% | 65.3% |
| 3661102 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.58 | 38.0 | 3.63e-01 | 100.0% | 54.5% |
| 3691059 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.58 | 40.0 | 2.73e-01 | 95.6% | 19.4% |
| 3475595 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 47.0 | 3.66e-01 | 93.3% | 51.0% |
| 3620559 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 46.0 | 3.68e-01 | 93.3% | 56.8% |
| 3970435 | 101.1.2.379 ↗ | alpha arrays › HTH › HTH › winged helix domain › NGO1945_C | 0.56 | 47.0 | 3.49e-01 | 100.0% | 36.1% |
| 5009535 | 148.1.3.410 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF6955 | 0.56 | 44.0 | 3.59e-01 | 95.6% | 86.0% |
| 3482406 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.56 | 37.0 | 3.98e-01 | 100.0% | 88.6% |
| 4971601 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.56 | 38.0 | 3.39e-01 | 73.3% | 95.7% |
| 3971840 | 101.1.2.379 ↗ | alpha arrays › HTH › HTH › winged helix domain › NGO1945_C | 0.56 | 47.0 | 3.49e-01 | 100.0% | 37.4% |
| 201018 | 243.13.1.1 ↗ | a+b two layers › Cystatin-like › Uncharacterized protein SSP0047 › Uncharacterized protein SSP0047 › SAUGI | 0.55 | 47.0 | 3.52e-01 | 100.0% | 39.2% |
| 3787112 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 42.0 | 3.70e-01 | 100.0% | 58.7% |
| 3419351 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.54 | 37.0 | 3.41e-01 | 100.0% | 52.3% |
| 3951048 | 331.4.1.17 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB | 0.53 | 39.0 | 3.16e-01 | 93.3% | 72.5% |
| 3280843 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.53 | 37.0 | 2.68e-01 | 75.6% | 45.5% |
| 3331711 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.52 | 45.0 | 2.62e-01 | 100.0% | 27.0% |
| 3685450 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.52 | 36.0 | 2.10e-01 | 100.0% | 6.7% |
| 3491884 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 44.0 | 3.50e-01 | 97.8% | 53.7% |
| 3964438 | 11.1.1.404 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4390 | 0.51 | 44.0 | 2.98e-01 | 100.0% | 69.8% |
| 3701194 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.50 | 41.0 | 3.00e-01 | 100.0% | 31.4% |