←Back to structures

IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003882

Arc-Vir

IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003882

Identity

Kingdom:
archaea

Quality

55.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-52
PDB
D2 high residues 60-181
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.71 49.0 5.65e-01 95.1% 100.0%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 48.0 5.31e-01 99.2% 100.0%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.50e-01 84.4% 89.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 42.0 4.15e-01 96.7% 70.2%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 50.0 4.97e-01 98.4% 98.4%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.81e-01 100.0% 58.3%
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 38.0 4.04e-01 81.1% 80.2%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 34.0 3.70e-01 86.1% 74.0%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.17e-01 83.6% 88.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 4.00e-01 100.0% 88.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.63e-01 95.9% 100.0%
6sziB01 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.50 41.0 3.03e-01 91.0% 56.0%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.75e-01 100.0% 67.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288338 1.1.7.27 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.69 50.0 5.60e-01 99.2% 98.9%
5025895 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 55.0 5.87e-01 97.5% 99.0%
5012252 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 49.0 5.13e-01 98.4% 86.4%
5069776 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 5.54e-01 98.4% 96.5%
3927551 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.62 56.0 5.21e-01 100.0% 98.0%
4492958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 5.11e-01 98.4% 98.1%
3892160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 39.0 4.35e-01 95.1% 87.8%
3928662 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 52.0 4.57e-01 100.0% 83.8%
3240679 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.47e-01 98.4% 70.6%
3433672 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.56 50.0 4.73e-01 100.0% 93.3%
4938590 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 4.11e-01 83.6% 86.3%
3515281 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 40.0 4.21e-01 98.4% 87.6%
5011662 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 47.0 4.40e-01 94.3% 94.0%
3629626 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 49.0 4.67e-01 100.0% 89.7%
3971757 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 48.0 4.85e-01 99.2% 97.5%
3586053 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 48.0 4.56e-01 100.0% 86.0%
4296554 11.1.1.31 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.54 37.0 3.86e-01 82.0% 75.7%
5061011 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 45.0 3.53e-01 92.6% 52.6%
3185864 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 46.0 4.51e-01 95.9% 99.3%
3431594 11.1.5.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TPD1_C 0.53 42.0 4.52e-01 95.9% 100.0%
3958044 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.99e-01 84.4% 89.0%
3600063 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.75e-01 91.8% 90.5%
3832276 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 43.0 4.44e-01 96.7% 99.1%
4961912 304.8.1.123 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › HVO_0513_N 0.50 27.0 3.18e-01 92.6% 78.7%
D3 medium residues 187-264
PDB
D4 medium residues 289-351
PDB