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IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003899

Arc-Vir

IMGVR_UViG_3300014913_001316-3300014913-Ga0164310_1000003899

Quality

91.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-97
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.74 68.0 4.76e-01 100.0% 43.6%
2iruA02 3.30.70.3300 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 67.0 5.88e-01 100.0% 89.1%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.71 65.0 4.48e-01 100.0% 52.4%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.71 65.0 4.27e-01 100.0% 61.9%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.69 64.0 5.17e-01 100.0% 54.5%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.68 63.0 4.64e-01 100.0% 46.6%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 51.0 5.25e-01 100.0% 84.4%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.68 46.0 4.56e-01 86.5% 65.0%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 46.0 5.13e-01 86.5% 93.2%
3h20A02 3.30.70.1790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RepB DNA-primase, N-terminal domain 0.67 60.0 5.92e-01 100.0% 91.3%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 46.0 5.31e-01 88.5% 100.0%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 49.0 5.24e-01 86.5% 90.1%
2y1rK00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 5.07e-01 100.0% 82.6%
1fvqA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 46.0 5.19e-01 86.5% 95.8%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 43.0 4.90e-01 86.5% 95.5%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.66 44.0 5.11e-01 89.6% 100.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 43.0 4.51e-01 86.5% 75.3%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 48.0 5.11e-01 97.9% 92.6%
2r7rA04 3.30.70.2480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 56.0 4.71e-01 93.8% 65.0%
2kkhA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 4.92e-01 87.5% 92.0%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 43.0 4.90e-01 86.5% 97.1%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.64 45.0 4.57e-01 86.5% 74.7%
1afiA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 44.0 4.89e-01 85.4% 95.8%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 49.0 4.86e-01 88.5% 79.8%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.63 49.0 5.30e-01 95.8% 100.0%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.62 49.0 4.90e-01 84.4% 97.0%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.62 47.0 3.91e-01 81.2% 88.1%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 45.0 4.03e-01 81.2% 54.5%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 45.0 4.82e-01 87.5% 93.7%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.61 47.0 4.94e-01 89.6% 89.8%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.61 37.0 3.42e-01 100.0% 48.0%
2ofhX00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.64e-01 86.5% 95.8%
2f40A00 3.30.70.1750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF11491 family, DUF3213 0.61 44.0 4.87e-01 89.6% 100.0%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 45.0 4.77e-01 86.5% 90.6%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.60 44.0 4.80e-01 82.3% 94.8%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.60 54.0 4.03e-01 100.0% 73.2%
1jwwA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 44.0 4.71e-01 91.7% 93.8%
4tqrA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 50.0 5.01e-01 91.7% 88.8%
4hvmB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.59 48.0 3.90e-01 88.5% 80.9%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.59 40.0 4.39e-01 100.0% 89.2%
2a6mA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.58 46.0 4.22e-01 86.5% 73.8%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.57 51.0 5.04e-01 100.0% 93.2%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 29.0 3.24e-01 70.8% 63.2%
3tvzB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 48.0 4.32e-01 100.0% 99.3%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 4.01e-01 83.3% 75.7%
4ae5C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 47.0 3.99e-01 100.0% 98.7%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.12e-01 83.3% 87.6%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 45.0 4.36e-01 99.0% 85.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.52 40.0 4.09e-01 86.5% 85.1%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 38.0 3.84e-01 78.1% 92.6%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 36.0 3.02e-01 74.0% 55.8%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 42.0 3.30e-01 94.8% 85.5%
2cy8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 40.0 3.20e-01 84.4% 52.4%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 40.0 3.54e-01 87.5% 67.3%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 35.0 2.66e-01 71.9% 75.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278096 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.73 68.0 4.60e-01 100.0% 38.4%
4987159 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.72 66.0 4.76e-01 100.0% 41.9%
4048407 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.72 50.0 5.46e-01 85.4% 87.5%
4997133 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.72 49.0 5.00e-01 84.4% 71.6%
4118694 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.72 48.0 5.33e-01 85.4% 88.0%
4159102 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.69 48.0 5.41e-01 86.5% 97.1%
3976762 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.69 48.0 5.39e-01 89.6% 93.3%
3515653 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 48.0 5.10e-01 74.0% 95.3%
5044181 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.68 49.0 5.48e-01 87.5% 97.3%
4603561 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.67 48.0 5.22e-01 89.6% 90.0%
4993423 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.67 45.0 5.01e-01 86.5% 89.3%
3629469 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.66 47.0 4.99e-01 86.5% 84.7%
4099043 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.66 49.0 5.42e-01 85.4% 98.7%
5301 304.24.1.2 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 0.66 43.0 4.88e-01 86.5% 94.0%
5015450 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.66 45.0 4.86e-01 86.5% 85.0%
4322692 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.66 49.0 5.33e-01 91.7% 96.2%
5072608 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.66 46.0 5.06e-01 85.4% 92.0%
4945151 304.128.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB › FtsX 0.65 46.0 5.11e-01 84.4% 94.7%
4006107 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 48.0 5.26e-01 96.9% 100.0%
3698115 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.65 44.0 3.61e-01 71.9% 39.4%
3686938 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 49.0 5.15e-01 91.7% 91.8%
4496232 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.65 48.0 5.24e-01 86.5% 95.0%
5035588 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.64 45.0 4.94e-01 87.5% 93.3%
5056043 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.64 42.0 4.83e-01 87.5% 98.5%
3598887 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 46.0 5.10e-01 87.5% 97.3%
4217144 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.64 48.0 5.15e-01 85.4% 95.0%
4017316 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.63 44.0 3.59e-01 76.0% 39.4%
3968877 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 46.0 4.99e-01 99.0% 100.0%
4667955 304.150.1.0 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain 0.62 48.0 4.88e-01 100.0% 85.3%
4501630 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 45.0 4.80e-01 86.5% 91.3%
3712597 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.62 48.0 4.91e-01 84.4% 87.8%
5020167 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.62 45.0 4.95e-01 89.6% 100.0%
4991065 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.62 43.0 4.58e-01 87.5% 83.5%
4297401 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.61 46.0 4.97e-01 87.5% 95.0%
3521668 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.61 45.0 4.83e-01 86.5% 93.8%
4552838 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.61 47.0 4.77e-01 99.0% 86.0%
4509594 304.28.1.2 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.61 46.0 4.85e-01 86.5% 90.6%
5072246 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.61 43.0 4.48e-01 87.5% 80.0%
5035989 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 44.0 4.58e-01 86.5% 82.2%
4779977 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 49.0 5.13e-01 90.6% 98.8%
3734895 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 51.0 4.94e-01 91.7% 89.5%
4943463 304.43.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.60 48.0 4.76e-01 87.5% 82.0%
5077139 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.60 43.0 4.58e-01 86.5% 90.0%
4939665 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.60 41.0 4.53e-01 87.5% 92.0%
3596732 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.60 35.0 3.88e-01 100.0% 73.3%
3737984 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.59 50.0 4.95e-01 91.7% 91.0%
4337484 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.59 52.0 4.57e-01 100.0% 78.0%
3578641 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 41.0 4.65e-01 83.3% 100.0%
3893846 304.5.1.25 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V-ATPase_C 0.58 47.0 4.60e-01 88.5% 89.5%
5000514 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.58 46.0 4.84e-01 86.5% 97.7%
5036563 304.137.1.3 a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain › RsmF-B_ferredox 0.57 41.0 3.88e-01 94.8% 60.8%
4929272 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.57 43.0 4.66e-01 99.0% 95.0%
3707484 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 46.0 4.58e-01 100.0% 84.8%
4931792 306.3.1.6 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DEAD_assoc 0.56 50.0 3.91e-01 96.9% 90.3%
3528591 304.24.1.24 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V-ATPase_C 0.56 45.0 4.39e-01 89.6% 90.5%
3191211 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.55 42.0 4.44e-01 86.5% 92.9%
3173339 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 41.0 4.37e-01 89.6% 96.5%
4097807 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.53 47.0 3.96e-01 100.0% 98.8%
3490375 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.51 42.0 3.27e-01 94.8% 78.8%
3245966 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.51 41.0 3.63e-01 87.5% 95.7%