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IMGVR_UViG_3300014914_000499-3300014914-Ga0164311_1000021219

Arc-Vir

IMGVR_UViG_3300014914_000499-3300014914-Ga0164311_1000021219

Quality

74.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-96
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02735.23 best Ku 25.9 1.20e-05 100.0% 35.8%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 45.0 5.16e-01 76.8% 100.0%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 48.0 4.17e-01 78.3% 78.7%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 50.0 4.24e-01 84.1% 78.4%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 47.0 4.27e-01 76.8% 94.6%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.65 38.0 3.66e-01 100.0% 52.6%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 48.0 4.25e-01 79.7% 94.0%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.64 43.0 3.86e-01 100.0% 49.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 40.0 4.26e-01 91.3% 74.6%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 48.0 3.78e-01 82.6% 66.4%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.62 48.0 4.12e-01 100.0% 51.8%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 37.0 3.92e-01 98.6% 66.1%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 45.0 3.73e-01 79.7% 77.3%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.61 40.0 3.42e-01 78.3% 39.8%
1sil000 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 44.0 2.77e-01 78.3% 96.9%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 40.0 3.70e-01 100.0% 54.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 45.0 3.97e-01 79.7% 82.0%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 3.75e-01 84.1% 75.0%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.58 41.0 3.50e-01 75.4% 55.8%
3lr5A00 3.30.450.300 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Sensor histidine kinase RisS, periplasmic domain 0.58 48.0 4.00e-01 91.3% 82.4%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 43.0 3.59e-01 84.1% 77.2%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.51e-01 78.3% 73.1%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 41.0 3.35e-01 85.5% 41.1%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.57 42.0 3.47e-01 79.7% 77.7%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.57 40.0 3.48e-01 75.4% 57.1%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.55e-01 82.6% 65.1%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 38.0 3.13e-01 71.0% 43.5%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.56 42.0 4.30e-01 81.2% 97.0%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 42.0 3.70e-01 84.1% 75.2%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.01e-01 73.9% 42.0%
3lxuX02 2.20.25.690 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 42.0 4.16e-01 97.1% 79.2%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 41.0 3.84e-01 82.6% 82.2%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 40.0 2.92e-01 79.7% 46.1%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.11e-01 73.9% 55.6%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 40.0 3.18e-01 85.5% 76.5%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 41.0 3.49e-01 84.1% 69.3%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 41.0 3.30e-01 84.1% 63.9%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 38.0 3.49e-01 79.7% 83.0%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 36.0 3.11e-01 78.3% 43.4%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 39.0 2.92e-01 81.2% 73.8%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.52 41.0 3.34e-01 95.7% 44.4%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 36.0 2.55e-01 73.9% 49.1%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.52 40.0 3.19e-01 82.6% 67.6%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 43.0 3.90e-01 100.0% 74.5%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 43.0 3.34e-01 100.0% 79.1%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4472148 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.96 92.0 6.28e-01 100.0% 36.1%
4661211 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.96 91.0 5.89e-01 100.0% 28.5%
4242756 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.95 91.0 6.17e-01 100.0% 35.2%
4090669 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.95 91.0 5.92e-01 100.0% 30.2%
4404169 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.95 90.0 5.85e-01 100.0% 29.0%
4428892 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.95 90.0 5.87e-01 100.0% 30.0%
4992391 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.95 90.0 5.76e-01 100.0% 27.4%
4459347 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.95 90.0 5.88e-01 100.0% 30.2%
4606042 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.94 89.0 5.81e-01 100.0% 29.2%
4190768 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.94 89.0 5.82e-01 100.0% 30.6%
4424918 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.94 89.0 5.75e-01 100.0% 29.0%
4510810 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.93 88.0 5.90e-01 100.0% 32.9%
4357706 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.93 88.0 5.86e-01 100.0% 32.2%
4987158 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.93 88.0 5.78e-01 100.0% 29.8%
4225561 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.93 88.0 5.72e-01 100.0% 29.4%
4975015 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.93 88.0 5.76e-01 100.0% 30.2%
4443286 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.92 87.0 5.65e-01 100.0% 28.8%
4443775 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.92 87.0 5.87e-01 100.0% 33.6%
4957926 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.89 82.0 5.43e-01 100.0% 30.8%
5018913 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.67 50.0 4.14e-01 79.7% 83.3%
3969990 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 54.0 3.72e-01 88.4% 45.8%
4950582 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 49.0 3.99e-01 79.7% 76.9%
5041424 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 48.0 4.21e-01 79.7% 86.7%
4098695 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.64 51.0 3.54e-01 88.4% 47.8%
4988948 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 50.0 4.18e-01 85.5% 75.8%
4980716 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 46.0 4.12e-01 78.3% 84.0%
4962396 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.62 46.0 4.00e-01 79.7% 82.7%
3277617 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 49.0 4.28e-01 87.0% 83.8%
4960081 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 46.0 4.06e-01 81.2% 92.0%
3930311 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.61 48.0 3.98e-01 85.5% 73.3%
3955906 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 44.0 4.16e-01 78.3% 77.6%
3975228 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.60 44.0 2.78e-01 78.3% 97.1%
3661102 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 36.0 3.93e-01 88.4% 74.5%
3395710 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 3.38e-01 79.7% 41.8%
4632674 223.1.1.171 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.59 47.0 3.99e-01 87.0% 73.0%
4136892 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 44.0 4.20e-01 79.7% 81.2%
3927525 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.59 43.0 2.96e-01 79.7% 22.0%
4459946 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.58 48.0 3.28e-01 91.3% 94.5%
4882206 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.58 44.0 3.72e-01 82.6% 72.7%
3840117 207.2.1.83 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › VacA2 0.58 44.0 2.46e-01 79.7% 9.5%
5013363 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.58 48.0 3.90e-01 91.3% 85.4%
3252765 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.58 42.0 3.48e-01 79.7% 74.1%
3173269 301.8.1.1 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.57 41.0 3.49e-01 78.3% 85.6%
4930594 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 42.0 4.14e-01 78.3% 82.7%
5064550 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 41.0 3.68e-01 75.4% 60.0%
3714612 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 44.0 3.38e-01 84.1% 75.8%
3791839 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 39.0 3.80e-01 98.6% 63.7%
3232235 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.56 38.0 3.30e-01 100.0% 42.6%
5051398 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.54e-01 81.2% 60.0%
5048999 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.56 48.0 3.92e-01 100.0% 70.0%
3960286 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.56 41.0 3.85e-01 78.3% 75.3%
3968112 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 43.0 3.41e-01 85.5% 81.2%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 39.0 4.26e-01 100.0% 94.5%
3392243 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.56 40.0 3.23e-01 78.3% 55.2%
3230771 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 39.0 3.66e-01 100.0% 57.8%
4969909 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.36e-01 84.1% 58.0%
4926836 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.57e-01 84.1% 73.6%
5045959 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 41.0 3.53e-01 81.2% 63.6%
3914585 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 43.0 3.76e-01 85.5% 75.2%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.52e-01 81.2% 64.5%
4953412 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 42.0 3.49e-01 84.1% 72.0%
3961090 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 42.0 3.34e-01 84.1% 74.8%
3597443 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 42.0 3.33e-01 85.5% 84.7%
5052577 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.33e-01 82.6% 70.8%
3714622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.48e-01 84.1% 57.5%
4069753 295.1.1.2 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.53 41.0 3.28e-01 82.6% 67.4%
3602995 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 40.0 3.44e-01 82.6% 65.2%
3851316 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.53 38.0 2.94e-01 78.3% 49.4%
3907293 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.60e-01 85.5% 81.0%
3390111 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.52 40.0 3.70e-01 84.1% 85.6%
3176053 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.35e-01 85.5% 71.5%
3281221 3435.1.1.5 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF6119 0.52 37.0 2.75e-01 78.3% 89.0%
3544563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.55e-01 85.5% 81.0%
4022557 9.23.1.5 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_5 0.52 38.0 2.92e-01 97.1% 35.3%
3704834 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.51 37.0 3.43e-01 79.7% 68.4%
3625965 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 41.0 3.70e-01 98.6% 64.2%
5019514 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.50 39.0 3.09e-01 84.1% 89.0%
3705153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.16e-01 85.5% 71.9%