←Back to structures
IMGVR_UViG_3300014914_000538-3300014914-Ga0164311_1000020124
Arc-VirIMGVR_UViG_3300014914_000538-3300014914-Ga0164311_1000020124
Identity
- Kingdom:
- archaea
Quality
68.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-71
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18906.6 best | Phage_tube_2 | 27.5 | 3.20e-06 | 98.4% | 21.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.61 | 45.0 | 3.95e-01 | 100.0% | 50.5% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.60 | 50.0 | 3.83e-01 | 100.0% | 40.7% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.56 | 41.0 | 2.75e-01 | 83.9% | 65.2% |
| 5ccbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 39.0 | 2.82e-01 | 79.0% | 31.9% |
| 2znhA03 | 6.20.40.10 | Special › Other non-globular › Porin MspA ribbon fold › | 0.53 | 36.0 | 3.84e-01 | 82.3% | 93.6% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 42.0 | 2.84e-01 | 93.5% | 76.8% |
| 2oplA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 44.0 | 3.32e-01 | 98.4% | 87.8% |
| 2jtyA00 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.53 | 39.0 | 2.84e-01 | 80.6% | 51.1% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 41.0 | 3.64e-01 | 98.4% | 79.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.75 | 65.0 | 4.21e-01 | 100.0% | 21.9% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 66.0 | 5.16e-01 | 100.0% | 50.0% |
| 5050743 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.61 | 51.0 | 3.83e-01 | 100.0% | 37.4% |
| 2841997 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.59 | 47.0 | 2.99e-01 | 91.9% | 39.7% |
| 4938091 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.59 | 47.0 | 3.75e-01 | 100.0% | 41.4% |
| 5008301 | 2003.1.5.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 | 0.58 | 40.0 | 2.95e-01 | 80.6% | 24.2% |
| 3483352 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.57 | 47.0 | 3.10e-01 | 96.8% | 26.4% |
| 5022633 | 2003.1.5.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 | 0.55 | 40.0 | 2.91e-01 | 79.0% | 25.4% |
| 5030332 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.55 | 47.0 | 3.47e-01 | 100.0% | 84.4% |
| 3199216 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.55 | 42.0 | 3.13e-01 | 83.9% | 68.8% |
| 5877 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 46.0 | 3.37e-01 | 100.0% | 83.4% |
| 1814317 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 2.97e-01 | 82.3% | 82.8% |
| 4187036 | 306.7.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain | 0.53 | 40.0 | 3.39e-01 | 87.1% | 47.3% |
| 3646350 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 36.0 | 2.78e-01 | 72.6% | 33.5% |
| 2048179 | 2485.3.1.8 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein | 0.51 | 35.0 | 2.52e-01 | 83.9% | 21.1% |
| 4862327 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 40.0 | 3.76e-01 | 98.4% | 89.8% |
| 3268411 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.50 | 36.0 | 2.92e-01 | 80.6% | 49.3% |