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IMGVR_UViG_3300014914_000538-3300014914-Ga0164311_100002017

Arc-Vir

IMGVR_UViG_3300014914_000538-3300014914-Ga0164311_100002017

Quality

80.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-263
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 35.0 4.04e-01 96.5% 76.5%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 36.0 4.11e-01 95.7% 83.4%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 33.0 3.89e-01 89.1% 90.8%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.50 25.0 3.46e-01 73.9% 97.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959638 58.2.1.0 beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain 0.79 46.0 5.78e-01 93.9% 91.0%
1692496 58.2.1.1 beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N 0.79 48.0 5.58e-01 93.9% 82.2%
3518771 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.60 36.0 4.03e-01 95.7% 75.0%
3402087 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.52 31.0 3.54e-01 96.1% 77.1%
3831652 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.51 34.0 4.03e-01 90.0% 96.8%
3708861 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.51 22.0 2.76e-01 79.1% 62.0%
D2 high residues 465-587
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 35.0 3.49e-01 89.4% 54.4%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 42.0 3.92e-01 73.2% 76.5%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 53.0 4.75e-01 100.0% 80.6%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 49.0 3.90e-01 92.7% 91.7%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 32.0 2.86e-01 100.0% 38.7%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 47.0 3.91e-01 91.1% 91.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.55 33.0 3.59e-01 94.3% 71.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 33.0 3.10e-01 91.9% 49.7%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 48.0 4.25e-01 95.9% 90.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 49.0 3.94e-01 99.2% 91.9%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 42.0 4.19e-01 82.9% 96.9%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 46.0 4.04e-01 95.1% 91.4%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 45.0 4.04e-01 95.1% 89.3%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 44.0 3.89e-01 93.5% 92.3%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 45.0 3.93e-01 95.9% 87.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
998899 58.2.1.1 beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N 0.87 79.0 8.07e-01 100.0% 98.3%
3697694 4.1.1.288 beta barrels › SH3 › SH3 › SH3 › DUF6540 0.66 41.0 4.27e-01 98.4% 65.3%
4301684 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 46.0 4.03e-01 72.4% 94.0%
4408461 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.65 45.0 3.94e-01 71.5% 88.5%
4052154 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.62 43.0 3.85e-01 70.7% 92.4%
408353 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.59 42.0 3.93e-01 73.2% 77.0%
4583479 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.59 51.0 4.54e-01 94.3% 92.5%
3407180 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 35.0 4.10e-01 99.2% 87.1%
4672378 71.1.1.1 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin 0.57 49.0 4.28e-01 93.5% 94.6%
1548777 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.57 49.0 3.90e-01 92.7% 91.7%
None 0.56 49.0 4.31e-01 95.1% 97.2%
3964096 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.56 39.0 3.48e-01 70.7% 85.1%
5014023 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 47.0 4.12e-01 93.5% 92.4%
3937294 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.55 50.0 4.38e-01 100.0% 75.6%
5018904 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.55 48.0 4.09e-01 95.1% 89.7%
3057488 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.53 46.0 3.97e-01 95.1% 87.2%
4159682 708.1.1.23 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › BAF1_ABF1 0.52 33.0 3.75e-01 70.7% 85.6%
5006751 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.52 45.0 3.94e-01 95.1% 88.4%
4951146 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.51 45.0 3.75e-01 95.1% 91.4%
4948927 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 45.0 3.76e-01 95.1% 93.3%
3222541 4252.1.1.15 beta barrels › AttH-like › AttH-like › AttH-like › PF30558 0.51 39.0 3.25e-01 82.1% 89.3%
5081501 4252.1.1.1 beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.51 38.0 3.47e-01 81.3% 86.9%
5005890 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.50 45.0 4.00e-01 98.4% 92.0%
D3 high residues 600-699
PDB
D4 medium residues 323-400
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.71 48.0 4.36e-01 70.5% 94.4%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.69 48.0 4.11e-01 73.1% 97.6%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 48.0 3.95e-01 85.9% 83.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.61 53.0 4.69e-01 98.7% 72.6%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.61 48.0 3.27e-01 87.2% 93.9%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 53.0 4.04e-01 100.0% 89.3%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.59 40.0 4.46e-01 74.4% 93.2%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.59 37.0 4.05e-01 70.5% 79.4%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 51.0 3.38e-01 98.7% 36.3%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 46.0 3.12e-01 92.3% 53.8%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 47.0 3.16e-01 96.2% 30.5%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.55 43.0 3.11e-01 84.6% 64.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.64e-01 100.0% 77.0%
3kd9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 3.28e-01 97.4% 34.1%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 46.0 4.11e-01 97.4% 75.2%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.41e-01 100.0% 66.0%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 45.0 4.03e-01 98.7% 77.0%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 45.0 3.98e-01 97.4% 77.0%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.74e-01 97.4% 78.9%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.61e-01 93.6% 66.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
998899 58.2.1.1 beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N 0.82 67.0 5.75e-01 98.7% 57.6%
4994776 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.73 50.0 4.68e-01 70.5% 95.8%
4972327 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.66 45.0 4.20e-01 71.8% 57.9%
6679 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.64 50.0 3.99e-01 84.6% 64.8%
3597380 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 55.0 4.81e-01 98.7% 78.3%
2870992 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.62 44.0 3.82e-01 74.4% 82.5%
3591170 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.62 55.0 4.78e-01 98.7% 74.2%
3094739 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.62 55.0 4.55e-01 98.7% 62.1%
3269768 719.1.1.1 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.62 55.0 4.60e-01 97.4% 82.2%
3495962 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 4.83e-01 98.7% 75.7%
3593275 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.88e-01 98.7% 78.2%
3470022 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 4.58e-01 98.7% 75.6%
3660624 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 55.0 3.49e-01 98.7% 27.1%
3094740 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.61 54.0 4.48e-01 98.7% 72.9%
3267754 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.61 52.0 4.49e-01 96.2% 90.4%
3609858 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.61 53.0 4.85e-01 98.7% 78.1%
3242315 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.60 40.0 4.57e-01 78.2% 96.4%
3464481 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.60 52.0 3.35e-01 97.4% 24.3%
3596842 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.50e-01 97.4% 65.8%
4010371 295.1.1.45 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.58 51.0 4.85e-01 100.0% 100.0%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.58 43.0 4.26e-01 82.1% 90.6%
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.58 52.0 3.94e-01 100.0% 57.2%
3926758 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.88e-01 97.4% 62.4%
3195138 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 48.0 3.09e-01 96.2% 27.0%
3596307 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.85e-01 97.4% 25.0%
4045121 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 37.0 3.74e-01 73.1% 73.8%
4288802 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 37.0 3.06e-01 74.4% 65.8%
4985567 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.53e-01 73.1% 61.1%
3598219 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.95e-01 98.7% 79.2%
3728206 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 44.0 2.94e-01 96.2% 22.8%
3754362 3426.1.1.0 beta meanders › Telethonin › Telethonin › Telethonin 0.53 34.0 3.77e-01 74.4% 86.7%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.51 42.0 4.24e-01 100.0% 95.0%
2154887 883.1.1.7 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 0.51 36.0 2.96e-01 75.6% 84.4%
3240866 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.50 41.0 3.78e-01 100.0% 69.0%
3909439 220.1.1.40 beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.50 43.0 3.84e-01 98.7% 79.1%