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IMGVR_UViG_3300014914_000629-3300014914-Ga0164311_100073295

Arc-Vir

IMGVR_UViG_3300014914_000629-3300014914-Ga0164311_100073295

Quality

75.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-219
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.75 45.0 5.19e-01 90.4% 79.9%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.67 44.0 4.70e-01 94.7% 75.2%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.67 41.0 4.82e-01 92.6% 87.1%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 43.0 4.71e-01 92.6% 84.6%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 39.0 4.41e-01 93.1% 81.9%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 34.0 4.37e-01 91.5% 97.1%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 39.0 4.40e-01 91.5% 85.1%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 32.0 3.32e-01 78.7% 53.9%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 25.0 3.32e-01 75.0% 72.9%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 34.0 4.12e-01 92.6% 91.4%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 38.0 4.22e-01 93.1% 86.1%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 32.0 3.19e-01 87.8% 53.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 31.0 3.82e-01 88.3% 91.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 26.0 3.39e-01 80.3% 85.8%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.51 29.0 3.24e-01 89.9% 68.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3611276 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.65 36.0 4.75e-01 83.0% 100.0%
5053124 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.62 24.0 3.61e-01 79.8% 85.3%
3789554 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 30.0 3.98e-01 75.5% 97.8%
4955900 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 26.0 3.59e-01 89.4% 97.8%
3583659 109.4.1.1735 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_12, TPR_16 0.51 23.0 2.64e-01 95.7% 54.3%
D2 high residues 285-374
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 67.0 6.96e-01 85.6% 90.4%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 64.0 6.75e-01 85.6% 96.3%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 73.0 6.94e-01 100.0% 94.1%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 53.0 4.10e-01 85.6% 92.1%
2f2cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 45.0 4.28e-01 91.1% 58.7%
2j1oA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 55.0 4.07e-01 98.9% 44.3%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.63 51.0 5.23e-01 91.1% 91.9%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 49.0 4.73e-01 94.4% 74.8%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 48.0 4.77e-01 83.3% 84.0%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 39.0 4.17e-01 73.3% 74.7%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.61 38.0 3.89e-01 74.4% 64.4%
1imvA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.60 51.0 3.97e-01 95.6% 86.9%
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.60 51.0 4.38e-01 94.4% 84.8%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 35.0 3.74e-01 70.0% 70.3%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 4.44e-01 94.4% 71.1%
3f5cB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 51.0 4.04e-01 96.7% 67.8%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 45.0 3.97e-01 83.3% 93.2%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.57 40.0 4.49e-01 92.2% 97.1%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.57 46.0 4.45e-01 90.0% 88.5%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 4.41e-01 95.6% 75.5%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 44.0 4.37e-01 94.4% 78.4%
2w53B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 49.0 4.06e-01 100.0% 86.7%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 40.0 3.52e-01 76.7% 83.3%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 42.0 3.81e-01 84.4% 99.2%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 44.0 3.49e-01 85.6% 82.1%
1bucA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.55 40.0 3.62e-01 76.7% 96.7%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.55 45.0 3.84e-01 91.1% 60.1%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 42.0 4.20e-01 94.4% 80.2%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.53 44.0 3.79e-01 90.0% 98.6%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 46.0 3.92e-01 95.6% 66.4%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.53 41.0 4.34e-01 92.2% 92.6%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 4.11e-01 91.1% 88.4%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 4.08e-01 93.3% 75.2%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 44.0 3.86e-01 96.7% 65.0%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.52 38.0 4.09e-01 95.6% 97.2%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 37.0 3.86e-01 82.2% 87.3%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 45.0 3.88e-01 96.7% 77.9%
2cwlB01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 43.0 3.21e-01 100.0% 75.5%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 43.0 3.37e-01 100.0% 90.1%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.51 39.0 3.12e-01 86.7% 85.0%
2oebA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.50 44.0 3.76e-01 98.9% 62.5%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.50 42.0 3.84e-01 92.2% 72.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
134570 3273.1.1.1 alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Sulf_coat_C 0.83 67.0 6.96e-01 85.6% 90.4%
4255360 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.68 60.0 4.26e-01 100.0% 43.2%
3661193 4198.1.1.2 alpha arrays › TerB-like › TerB-like › TerB-like › ThylakoidFormat 0.66 53.0 4.19e-01 87.8% 43.8%
4106251 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.64 56.0 4.05e-01 100.0% 44.7%
3681611 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 45.0 3.82e-01 94.4% 43.9%
3249883 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.61 54.0 4.78e-01 97.8% 68.8%
4938848 5069.1.3.131 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF92 0.61 46.0 4.53e-01 82.2% 98.0%
3838401 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.61 45.0 4.40e-01 78.9% 71.0%
5053821 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.58 51.0 4.98e-01 100.0% 93.0%
3462581 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 45.0 3.73e-01 84.4% 72.1%
3452645 101.35.1.31 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Gliadin 0.58 41.0 4.12e-01 75.6% 76.8%
3822810 1128.1.1.13 alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.58 45.0 4.41e-01 84.4% 90.0%
5000181 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 45.0 4.24e-01 94.4% 69.1%
3987752 162.1.1.2 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD_Mga 0.58 47.0 4.21e-01 93.3% 64.0%
3423711 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.57 45.0 4.27e-01 96.7% 70.0%
5001330 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 50.0 4.64e-01 96.7% 86.1%
3734767 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 44.0 3.38e-01 84.4% 65.0%
5000678 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 45.0 4.36e-01 94.4% 77.0%
3817553 3684.1.1.49 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PF30094 0.57 44.0 4.18e-01 82.2% 83.8%
5009678 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 45.0 3.63e-01 85.6% 74.9%
5039798 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 40.0 3.95e-01 100.0% 69.0%
3478383 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 46.0 3.95e-01 94.4% 56.6%
3805676 1128.1.1.13 alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.55 43.0 4.37e-01 85.6% 100.0%
3853843 102.1.3.5 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › OAS1_C 0.55 47.0 3.83e-01 94.4% 84.1%
3227203 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.54 46.0 3.91e-01 93.3% 58.7%
4020872 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 38.0 3.30e-01 74.4% 92.9%
3378930 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.54 48.0 4.33e-01 98.9% 75.2%
4506271 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 46.0 3.95e-01 94.4% 61.4%
3690755 109.5.1.1 alpha superhelices › Repetitive alpha hairpins › adenylylcyclase associated protein, CAP-N › adenylylcyclase associated protein, CAP-N › CAP_N 0.54 45.0 3.68e-01 97.8% 83.7%
4019703 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 40.0 3.23e-01 78.9% 94.3%
3740436 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.54 46.0 4.17e-01 94.4% 85.8%
1276701 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 45.0 4.04e-01 93.3% 79.2%
3204144 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 45.0 4.02e-01 92.2% 70.0%
5073287 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 47.0 3.84e-01 100.0% 54.9%
4251398 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.53 40.0 3.90e-01 83.3% 76.2%
3600676 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 43.0 4.05e-01 94.4% 72.7%
3293277 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 47.0 3.89e-01 100.0% 84.2%
3238610 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 46.0 4.02e-01 100.0% 82.8%
3277203 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 46.0 3.90e-01 97.8% 87.1%
3392725 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 47.0 4.14e-01 100.0% 94.8%
4542785 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.53 45.0 4.11e-01 94.4% 85.0%
3310282 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.52 45.0 4.08e-01 94.4% 85.0%
5048188 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.48e-01 86.7% 60.6%
3689712 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 45.0 3.40e-01 95.6% 47.4%
3637195 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.51 37.0 3.63e-01 76.7% 90.0%
4018032 174.1.1.18 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erv26 0.51 44.0 3.75e-01 100.0% 74.4%
4593081 601.1.2.139 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF30710 0.51 43.0 3.69e-01 93.3% 62.1%
3171529 5025.1.1.7 extended segments › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › Erv26 0.51 44.0 4.03e-01 100.0% 92.0%
3646228 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 44.0 3.72e-01 97.8% 56.2%
3183766 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 39.0 3.08e-01 84.4% 68.1%
3720695 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 39.0 2.93e-01 84.4% 59.2%
3243410 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 39.0 3.37e-01 85.6% 86.9%
3596123 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 3.23e-01 88.9% 70.8%
D3 medium residues 246-284
PDB