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IMGVR_UViG_3300014914_000852-3300014914-Ga0164311_100022737

Arc-Vir

IMGVR_UViG_3300014914_000852-3300014914-Ga0164311_100022737

Quality

97.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 71.0 5.00e-01 100.0% 55.9%
2if6B00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.76 65.0 4.50e-01 94.6% 47.2%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 64.0 4.94e-01 100.0% 62.8%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.73 64.0 4.89e-01 100.0% 59.0%
4gc5A02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.59 43.0 3.79e-01 80.4% 75.6%
6kvrA01 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.58 48.0 2.84e-01 100.0% 36.2%
1xhcA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.29e-01 91.1% 89.4%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 39.0 2.91e-01 80.4% 41.6%
6ncvA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 40.0 3.46e-01 80.4% 63.7%
5lxvB00 1.10.1330.10 Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain 0.53 38.0 3.66e-01 76.8% 81.5%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 3.38e-01 96.4% 56.4%
2v6kA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 36.0 2.89e-01 82.1% 32.3%
3khxA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 40.0 2.84e-01 94.6% 64.9%
3nb0B03 6.10.260.10 Special › Helix non-globular › F1FO ATP Synthase › 0.51 37.0 3.33e-01 80.4% 54.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963980 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.91 85.0 6.08e-01 100.0% 42.7%
3284393 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.76 68.0 5.14e-01 98.2% 58.1%
7414 219.1.1.36 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.76 65.0 4.50e-01 94.6% 46.7%
4476649 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.76 68.0 5.08e-01 100.0% 64.4%
4967027 2498.1.1.164 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF6775 0.57 46.0 3.20e-01 96.4% 92.6%
3636075 4.1.1.221 beta barrels › SH3 › SH3 › SH3 › DUF6914 0.56 48.0 3.55e-01 100.0% 37.2%
3986382 1112.1.1.0 alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.56 36.0 3.54e-01 89.3% 60.0%
3172606 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.52 42.0 2.51e-01 100.0% 37.5%
4033305 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.51 41.0 2.77e-01 100.0% 54.4%
394749 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.50 42.0 3.08e-01 100.0% 86.9%
D2 medium residues 57-138
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.80 67.0 5.80e-01 89.0% 62.0%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.79 68.0 5.82e-01 92.7% 61.9%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 66.0 5.34e-01 92.7% 56.8%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 69.0 5.94e-01 98.8% 76.4%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 67.0 5.72e-01 100.0% 81.4%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 65.0 5.54e-01 98.8% 96.9%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 61.0 5.13e-01 98.8% 87.9%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 57.0 4.27e-01 93.9% 86.0%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 61.0 5.11e-01 98.8% 79.3%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 58.0 5.06e-01 100.0% 71.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.91e-01 76.8% 98.4%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 48.0 4.64e-01 85.4% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.25e-01 72.0% 78.3%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 3.48e-01 100.0% 95.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.45e-01 91.5% 90.6%
2pkaA00 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 38.0 3.88e-01 87.8% 67.5%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.96e-01 76.8% 93.8%
3hpeA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.57 39.0 3.15e-01 70.7% 99.4%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.44e-01 95.1% 91.8%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.40e-01 80.5% 56.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 34.0 4.09e-01 78.0% 100.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.30e-01 96.3% 94.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.61e-01 79.3% 82.1%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 39.0 3.80e-01 75.6% 97.8%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.54 35.0 3.46e-01 78.0% 60.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.33e-01 98.8% 97.3%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.50e-01 74.4% 85.7%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.08e-01 76.8% 47.0%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.52 34.0 3.32e-01 70.7% 60.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 42.0 4.39e-01 93.9% 97.3%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.27e-01 79.3% 79.6%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 35.0 2.84e-01 72.0% 91.8%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 40.0 3.89e-01 86.6% 98.9%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 40.0 2.77e-01 87.8% 67.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975571 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.89 84.0 6.19e-01 100.0% 44.7%
3968700 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.88 83.0 6.74e-01 100.0% 72.9%
3947596 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.86 80.0 6.63e-01 100.0% 63.0%
3963980 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.83 76.0 6.18e-01 97.6% 56.6%
5063005 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.80 66.0 5.80e-01 93.9% 61.0%
3286961 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.80 64.0 5.24e-01 93.9% 48.3%
4078132 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.79 68.0 5.78e-01 92.7% 60.9%
3979648 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.77 69.0 5.67e-01 98.8% 55.6%
4277582 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.77 68.0 5.68e-01 95.1% 80.0%
4169712 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.77 65.0 5.54e-01 90.2% 60.0%
161350 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.76 65.0 5.32e-01 92.7% 56.4%
3468015 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.76 56.0 4.47e-01 76.8% 58.1%
3278116 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.76 61.0 5.40e-01 90.2% 60.9%
3517692 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.76 62.0 5.34e-01 92.7% 57.6%
1489617 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.75 69.0 5.86e-01 100.0% 73.1%
3980140 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.74 65.0 5.42e-01 93.9% 74.1%
3257922 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.73 61.0 5.77e-01 89.0% 76.8%
182479 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.72 67.0 4.87e-01 100.0% 94.2%
3282002 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 60.0 4.32e-01 95.1% 76.6%
3539509 219.1.1.54 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.64 56.0 3.89e-01 100.0% 94.3%
3903618 219.1.1.54 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.63 55.0 3.83e-01 100.0% 94.1%
4015071 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.55e-01 72.0% 82.9%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.62e-01 72.0% 100.0%
4464028 633.23.1.37 alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 0.58 40.0 2.88e-01 70.7% 75.7%
3389169 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 44.0 4.44e-01 96.3% 82.4%
3628119 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 43.0 4.40e-01 82.9% 97.5%
3934671 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 44.0 4.43e-01 85.4% 92.9%
3517377 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 45.0 4.47e-01 95.1% 84.7%
3995338 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 43.0 3.58e-01 86.6% 77.4%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.46e-01 96.3% 85.3%
3933049 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 43.0 3.10e-01 87.8% 88.0%
3936496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.17e-01 96.3% 77.0%
4989705 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 39.0 3.69e-01 80.5% 66.7%
5030537 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 32.0 3.25e-01 72.0% 58.8%
3939583 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.53 43.0 2.93e-01 87.8% 73.2%
3576128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.19e-01 98.8% 79.1%
3877485 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 42.0 4.25e-01 96.3% 85.9%
3511337 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 43.0 4.22e-01 96.3% 84.4%
3883161 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 41.0 4.04e-01 96.3% 83.3%
3231485 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 39.0 3.21e-01 82.9% 71.2%
3214083 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 37.0 3.09e-01 79.3% 74.8%
3547102 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 40.0 3.99e-01 96.3% 88.2%