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IMGVR_UViG_3300014914_000852-3300014914-Ga0164311_100022738

Arc-Vir

IMGVR_UViG_3300014914_000852-3300014914-Ga0164311_100022738

Identity

Kingdom:
archaea

Quality

82.8 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-140
PDB
Domain cluster: rep: OQ067477.1__WCD44161.1__Lumi_022__00022__D8-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09931.16 best Phage_phiJL001_Gp84_N 154.1 4.90e-45 100.0% 81.9%
D2 high residues 167-264
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09356.16 best Phage_BR0599 74.7 8.50e-21 71.4% 86.2%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 51.0 5.83e-01 80.6% 100.0%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.73 57.0 5.88e-01 82.7% 100.0%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 61.0 6.29e-01 96.9% 100.0%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.71 57.0 4.86e-01 85.7% 66.9%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.71 53.0 5.06e-01 82.7% 68.8%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 51.0 5.67e-01 78.6% 100.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 52.0 5.65e-01 78.6% 100.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 54.0 5.34e-01 84.7% 96.2%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 55.0 4.95e-01 85.7% 73.3%
4x8iA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.68 49.0 5.20e-01 75.5% 100.0%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 52.0 4.64e-01 81.6% 82.5%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.68 48.0 5.14e-01 75.5% 100.0%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.67 48.0 5.11e-01 75.5% 100.0%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 52.0 4.63e-01 83.7% 88.3%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.65 50.0 4.87e-01 81.6% 100.0%
3bnwB00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.65 56.0 4.79e-01 94.9% 97.5%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.65 49.0 4.75e-01 81.6% 100.0%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 47.0 4.72e-01 76.5% 95.9%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.63 48.0 4.64e-01 82.7% 100.0%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.61 50.0 5.26e-01 95.9% 100.0%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.61 52.0 3.98e-01 93.9% 86.0%
1hkvA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.60 52.0 4.20e-01 94.9% 72.4%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.44e-01 96.9% 70.6%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 4.39e-01 74.5% 97.7%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.58 50.0 4.40e-01 94.9% 67.4%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 43.0 4.09e-01 93.9% 67.2%
4xg1A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.56 48.0 4.01e-01 95.9% 56.2%
1d7kB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.55 47.0 4.29e-01 95.9% 78.2%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.18e-01 79.6% 87.2%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 46.0 3.74e-01 95.9% 57.2%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.84e-01 94.9% 75.9%
4fx5A01 2.60.40.3670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.66e-01 96.9% 57.0%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 46.0 3.51e-01 99.0% 52.5%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.53 45.0 3.55e-01 95.9% 70.1%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 3.62e-01 81.6% 97.8%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 4.00e-01 100.0% 69.8%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.52 44.0 4.32e-01 95.9% 89.4%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.71e-01 85.7% 97.7%
4b9iA00 2.60.40.3480 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.79e-01 88.8% 87.2%
7jnfA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.59e-01 95.9% 54.5%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 43.0 3.99e-01 95.9% 89.8%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 42.0 4.07e-01 92.9% 81.7%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 43.0 3.59e-01 95.9% 93.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964292 1.1.13.38 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.96 91.0 8.64e-01 100.0% 87.3%
3973332 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.84 62.0 7.00e-01 91.8% 98.7%
4521518 1.1.7.121 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.80 74.0 7.03e-01 100.0% 86.1%
5078307 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.79 57.0 6.42e-01 74.5% 98.7%
4995824 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 55.0 6.31e-01 73.5% 100.0%
4026674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.76 59.0 6.45e-01 85.7% 100.0%
3945528 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 57.0 6.25e-01 92.9% 98.8%
1281033 1.1.7.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF4438 0.74 63.0 5.37e-01 93.9% 90.6%
5029749 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.74 56.0 5.85e-01 80.6% 100.0%
4011239 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 56.0 6.07e-01 83.7% 98.8%
4943366 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 57.0 6.05e-01 83.7% 95.3%
4075959 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.73 57.0 4.26e-01 82.7% 96.6%
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 57.0 6.09e-01 86.7% 96.5%
4980136 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.72 55.0 5.77e-01 80.6% 100.0%
4194551 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 52.0 5.77e-01 82.7% 100.0%
4947671 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 49.0 5.37e-01 72.4% 100.0%
4197746 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 53.0 5.59e-01 83.7% 90.6%
4061526 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.70 53.0 5.31e-01 79.6% 99.0%
4943639 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 55.0 5.89e-01 91.8% 98.8%
4402716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 52.0 5.50e-01 85.7% 94.1%
4660673 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 53.0 5.64e-01 83.7% 96.5%
3574784 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 55.0 5.34e-01 87.8% 91.8%
2161972 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 51.0 5.50e-01 83.7% 96.4%
4627066 1.1.7.44 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.67 53.0 5.08e-01 85.7% 93.9%
3452625 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.67 52.0 5.24e-01 83.7% 89.0%
3268887 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 51.0 5.08e-01 80.6% 94.0%
3949068 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.67 56.0 4.99e-01 90.8% 87.1%
3617006 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 5.01e-01 84.7% 99.1%
127 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.65 49.0 4.79e-01 81.6% 74.3%
5011201 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.64 44.0 4.45e-01 70.4% 98.9%
4177510 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.63 49.0 4.51e-01 100.0% 64.0%
3575535 1.1.7.113 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.63 56.0 3.65e-01 100.0% 79.1%
5064548 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.63 33.0 4.23e-01 80.6% 92.5%
5037204 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.63 46.0 4.29e-01 75.5% 80.8%
4959198 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.61 47.0 4.21e-01 81.6% 97.1%
4399542 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 50.0 5.19e-01 93.9% 97.8%
5052758 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.59 47.0 4.24e-01 85.7% 88.9%
5057234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.99e-01 81.6% 81.4%
1005556 10.2.1.65 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel 0.58 41.0 4.33e-01 74.5% 96.6%
3741069 4.1.1.314 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.57 40.0 3.01e-01 74.5% 52.8%
5054535 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.57 46.0 4.47e-01 99.0% 78.2%
4358801 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.57 39.0 3.83e-01 72.4% 96.4%
3413714 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.56 41.0 3.17e-01 75.5% 63.2%
4937910 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.56 46.0 4.22e-01 100.0% 66.9%
4112177 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.56 35.0 4.08e-01 74.5% 92.3%
5028926 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.56 45.0 4.04e-01 100.0% 61.4%
3789132 4.1.1.146 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.55 43.0 3.35e-01 84.7% 59.6%
4807995 4.1.1.314 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.55 44.0 3.27e-01 86.7% 56.8%
3300738 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.55 39.0 3.45e-01 75.5% 72.7%
4026161 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.54 39.0 3.63e-01 75.5% 82.4%
4203006 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.54 38.0 3.68e-01 72.4% 97.3%
4279051 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.54 46.0 4.54e-01 100.0% 88.6%
4452122 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.54 39.0 3.63e-01 75.5% 89.4%
3202614 4.1.1.146 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.54 43.0 2.98e-01 86.7% 53.0%
3933470 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 46.0 3.66e-01 100.0% 68.4%
3789605 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.53 46.0 3.52e-01 100.0% 54.3%
4181687 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.53 38.0 3.78e-01 75.5% 100.0%
4027527 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.53 39.0 4.18e-01 93.9% 92.9%
3636432 4.1.1.314 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.52 42.0 3.21e-01 86.7% 63.7%
3795823 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.52 41.0 3.10e-01 85.7% 59.6%
4639331 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 37.0 3.44e-01 74.5% 92.0%
2491354 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.52 40.0 4.08e-01 91.8% 86.5%
3925197 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 41.0 3.07e-01 85.7% 58.0%
3308932 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.51 43.0 3.34e-01 95.9% 54.2%
3421099 225.1.1.2 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90,HATPase_c_3 0.51 43.0 3.26e-01 95.9% 49.1%
3178394 10.32.1.175 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_3 0.51 43.0 3.63e-01 94.9% 57.1%
1887972 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 41.0 3.92e-01 94.9% 73.3%
1125239 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.51 35.0 3.51e-01 72.4% 98.1%