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IMGVR_UViG_3300015214_001506-3300015214-Ga0172382_100477616

Arc-Vir

IMGVR_UViG_3300015214_001506-3300015214-Ga0172382_100477616

Quality

83.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-72
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 51.0 4.26e-01 82.4% 44.5%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.71 46.0 4.88e-01 82.4% 73.8%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.71 49.0 4.78e-01 82.4% 67.1%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 47.0 5.01e-01 77.9% 81.7%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.68 51.0 4.49e-01 94.1% 56.2%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 44.0 4.67e-01 82.4% 77.6%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.67 47.0 4.58e-01 83.8% 67.1%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 41.0 4.03e-01 76.5% 58.1%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 58.0 4.16e-01 100.0% 46.5%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.85e-01 80.9% 88.4%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 56.0 5.05e-01 100.0% 81.4%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 52.0 3.63e-01 89.7% 29.2%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 52.0 4.55e-01 89.7% 64.4%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 52.0 5.05e-01 91.2% 82.7%
2pftA00 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.63 55.0 3.27e-01 100.0% 16.0%
1wudA00 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.62 44.0 4.29e-01 85.3% 67.5%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 46.0 4.70e-01 83.8% 79.1%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 39.0 3.44e-01 77.9% 42.6%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 44.0 4.01e-01 80.9% 55.4%
1ji8A02 1.10.10.370 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DsrC protein, C-terminal domain 0.61 49.0 5.02e-01 88.2% 95.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 42.0 4.09e-01 82.4% 66.2%
2gsoA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.60 50.0 3.28e-01 89.7% 25.4%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 52.0 3.87e-01 100.0% 50.5%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 38.0 3.35e-01 76.5% 42.3%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 42.0 4.16e-01 79.4% 69.9%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 47.0 4.89e-01 85.3% 89.2%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 53.0 4.49e-01 98.5% 73.0%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 44.0 4.58e-01 88.2% 90.2%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 53.0 4.92e-01 100.0% 94.1%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.59 46.0 4.32e-01 82.4% 76.2%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.68e-01 89.7% 95.9%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 49.0 3.62e-01 95.6% 34.9%
3g7rA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 48.0 3.58e-01 95.6% 85.2%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 3.92e-01 83.8% 100.0%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 4.32e-01 88.2% 75.9%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 3.92e-01 83.8% 83.8%
2xgjA04 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.57 45.0 3.54e-01 82.4% 85.6%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 44.0 4.30e-01 83.8% 82.9%
2f1kC02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.57 48.0 4.17e-01 98.5% 79.6%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 47.0 4.34e-01 97.1% 93.5%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 3.59e-01 89.7% 49.3%
2dofA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.56 45.0 4.21e-01 91.2% 74.1%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 46.0 3.77e-01 91.2% 68.0%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 41.0 3.59e-01 79.4% 54.5%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.64e-01 100.0% 45.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 44.0 4.32e-01 92.6% 96.0%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 45.0 3.91e-01 91.2% 75.0%
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.54 39.0 3.90e-01 77.9% 76.5%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.53 38.0 3.84e-01 82.4% 77.1%
7ckaA01 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 42.0 3.09e-01 92.6% 39.1%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.52 47.0 3.40e-01 100.0% 50.3%
3lstA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 45.0 3.08e-01 98.5% 35.6%
2yqdA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 42.0 3.52e-01 91.2% 64.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954674 101.31.1.0 alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit 0.76 66.0 5.62e-01 94.1% 62.9%
4214713 604.9.1.13 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › GET2 0.75 45.0 3.63e-01 94.1% 32.0%
4495474 101.39.1.1 alpha arrays › HTH › Replication protein RepB C-terminal domain › Replication protein RepB C-terminal domain › RepB_C 0.70 64.0 6.35e-01 100.0% 98.6%
4175269 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.67 47.0 2.84e-01 83.8% 11.0%
3635376 3755.3.1.298 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING 0.67 51.0 4.02e-01 83.8% 40.7%
4958744 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 58.0 4.91e-01 97.1% 87.3%
5039798 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.66 49.0 4.31e-01 98.5% 54.0%
4158600 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.66 49.0 3.89e-01 80.9% 44.8%
3677692 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 58.0 4.56e-01 100.0% 64.1%
3632454 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.66 58.0 5.42e-01 98.5% 100.0%
3407072 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 59.0 5.64e-01 100.0% 98.8%
3719058 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 58.0 5.40e-01 100.0% 90.6%
3990094 5086.1.1.94 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD 0.64 49.0 3.59e-01 79.4% 40.0%
3937759 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 42.0 4.23e-01 80.9% 65.7%
3935017 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 55.0 5.27e-01 98.5% 100.0%
3265664 4336.1.1.0 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like 0.63 45.0 4.06e-01 82.4% 55.6%
4435347 6035.1.1.2 alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › RepB_primase_C 0.63 47.0 4.14e-01 79.4% 60.0%
3659245 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 55.0 3.99e-01 100.0% 49.5%
3719948 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 47.0 4.82e-01 80.9% 81.5%
3720558 102.1.1.2 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC 0.63 53.0 4.82e-01 100.0% 70.0%
3511929 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.63 56.0 4.57e-01 98.5% 76.8%
4939803 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 52.0 4.42e-01 91.2% 99.1%
3670388 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 41.0 3.25e-01 70.6% 33.3%
5039732 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 48.0 4.03e-01 82.4% 54.0%
3931593 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 56.0 5.30e-01 100.0% 97.5%
4600309 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.62 44.0 3.96e-01 76.5% 72.0%
4483437 601.13.1.2 alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS 0.62 48.0 3.84e-01 82.4% 83.1%
3902786 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.62 54.0 4.95e-01 95.6% 80.7%
3796589 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.62 55.0 4.84e-01 100.0% 78.0%
4286197 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 48.0 4.53e-01 82.4% 75.0%
4993593 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.61 50.0 4.81e-01 91.2% 78.8%
4647819 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.61 48.0 3.03e-01 86.8% 79.2%
3936021 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 48.0 3.33e-01 82.4% 29.5%
3463676 109.4.1.1186 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6857 0.61 53.0 4.12e-01 100.0% 50.3%
4028108 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.59 54.0 4.53e-01 98.5% 73.6%
1174239 129.1.1.3 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › UDPG_MGDP_dh 0.59 51.0 4.43e-01 100.0% 91.8%
3662896 101.1.1.411 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.59 46.0 3.76e-01 83.8% 45.6%
3505608 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.59 45.0 4.34e-01 79.4% 74.7%
4009660 604.1.1.21 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF2645 0.59 50.0 4.35e-01 94.1% 92.3%
3616723 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.59 49.0 4.03e-01 92.6% 69.6%
3484316 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.58 52.0 4.25e-01 100.0% 66.4%
3642081 109.4.1.2663 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin, Vps39_1 0.58 50.0 2.98e-01 98.5% 16.4%
5001357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.46e-01 97.1% 88.0%
3628708 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 49.0 3.84e-01 95.6% 58.0%
3401392 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 49.0 4.01e-01 95.6% 66.9%
4303437 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.58 48.0 3.24e-01 94.1% 69.5%
3701311 5059.1.1.17 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234 0.58 44.0 3.66e-01 80.9% 52.2%
3455413 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.58 49.0 4.02e-01 94.1% 63.2%
3622515 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 48.0 4.59e-01 100.0% 92.9%
3493371 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.57 50.0 4.02e-01 98.5% 61.5%
3695551 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.55 50.0 2.98e-01 100.0% 42.4%
4025989 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 46.0 3.17e-01 91.2% 28.5%
3931889 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.54 44.0 3.75e-01 91.2% 67.8%
5063374 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 45.0 3.70e-01 97.1% 61.5%
3456067 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 45.0 3.84e-01 100.0% 82.5%
3483981 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.53 46.0 3.89e-01 95.6% 67.8%
4947368 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 44.0 3.39e-01 95.6% 58.2%
3183493 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 45.0 3.71e-01 95.6% 67.5%
3470585 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.52 44.0 3.02e-01 100.0% 33.0%
3741939 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.52 41.0 3.85e-01 88.2% 85.9%
3470486 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.52 44.0 3.03e-01 100.0% 33.6%
3248710 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 44.0 3.70e-01 100.0% 66.7%