Back to structures

IMGVR_UViG_3300016263_000379-3300016263-Ga0185526_1138468

Arc-Vir

IMGVR_UViG_3300016263_000379-3300016263-Ga0185526_1138468

Quality

81.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-94
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.66 45.0 4.46e-01 100.0% 66.7%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.65 52.0 5.15e-01 93.8% 81.6%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.63 43.0 3.96e-01 77.8% 54.3%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.56e-01 93.8% 93.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 51.0 4.61e-01 93.8% 81.6%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.61 51.0 4.68e-01 95.1% 97.2%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 47.0 3.90e-01 86.4% 94.5%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.59 49.0 3.81e-01 93.8% 93.7%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.45e-01 93.8% 94.0%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.59 44.0 4.63e-01 100.0% 88.7%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.59 45.0 3.84e-01 100.0% 48.6%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.25e-01 95.1% 86.6%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.45e-01 93.8% 91.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 48.0 4.05e-01 100.0% 52.1%
3k0zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.07e-01 95.1% 73.2%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.34e-01 95.1% 96.7%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.27e-01 95.1% 24.5%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.38e-01 91.4% 81.6%
3ig4A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.58 49.0 3.55e-01 96.3% 87.5%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 49.0 4.50e-01 100.0% 86.6%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 3.88e-01 92.6% 95.6%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.33e-01 93.8% 92.9%
4b28A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.57 52.0 3.67e-01 98.8% 87.8%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.25e-01 100.0% 88.9%
3n72A00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.57 44.0 3.75e-01 86.4% 81.1%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.42e-01 92.6% 78.9%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.89e-01 93.8% 95.3%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 42.0 3.87e-01 77.8% 62.4%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.53e-01 92.6% 92.4%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.48e-01 76.5% 81.7%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.97e-01 95.1% 88.9%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 45.0 3.64e-01 93.8% 95.4%
3gdiA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 4.33e-01 100.0% 93.7%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.86e-01 95.1% 75.7%
2x32A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 44.0 3.60e-01 93.8% 96.0%
1ex2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 42.0 3.23e-01 82.7% 44.3%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.54 41.0 3.88e-01 82.7% 75.8%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 48.0 4.09e-01 100.0% 71.3%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.00e-01 87.7% 90.2%
1tu5A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.08e-01 93.8% 82.4%
4fqpA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.19e-01 90.1% 90.2%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.09e-01 95.1% 93.6%
3ub8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 48.0 3.87e-01 100.0% 61.1%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 4.04e-01 100.0% 70.2%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.87e-01 95.1% 92.4%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.92e-01 95.1% 87.0%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.04e-01 98.8% 93.0%
3mjgB00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 40.0 3.76e-01 82.7% 72.3%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 44.0 3.11e-01 95.1% 39.6%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 37.0 3.71e-01 100.0% 71.3%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 46.0 3.98e-01 100.0% 69.8%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.82e-01 100.0% 66.7%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.73e-01 93.8% 92.2%
6iccA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 40.0 3.99e-01 96.3% 82.6%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.53e-01 96.3% 51.4%
3cebA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 37.0 3.71e-01 77.8% 77.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.48e-01 97.5% 53.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990889 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.68 60.0 5.73e-01 100.0% 84.2%
3926107 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.65 46.0 4.69e-01 100.0% 75.0%
4405445 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 48.0 5.11e-01 93.8% 92.9%
3277662 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 56.0 5.16e-01 100.0% 92.7%
3385295 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 49.0 3.52e-01 95.1% 28.5%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 52.0 4.89e-01 100.0% 74.0%
4204465 881.1.1.36 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25844 0.62 54.0 4.59e-01 100.0% 58.5%
3700354 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 54.0 4.15e-01 100.0% 61.0%
5046747 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.62 55.0 3.60e-01 100.0% 28.5%
3280212 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 54.0 4.94e-01 100.0% 87.3%
1282329 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.61 51.0 4.52e-01 93.8% 76.9%
4028777 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 44.0 2.65e-01 93.8% 10.2%
2617498 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.60 50.0 4.62e-01 95.1% 96.3%
3816322 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 41.0 2.75e-01 93.8% 17.3%
5064364 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.60 47.0 3.22e-01 85.2% 33.8%
5007977 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 52.0 4.48e-01 100.0% 65.2%
5047293 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.60 52.0 4.51e-01 100.0% 74.6%
4556248 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 51.0 3.70e-01 100.0% 36.9%
3957514 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 50.0 4.34e-01 97.5% 76.9%
2724186 243.1.1.67 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.59 49.0 4.32e-01 92.6% 86.7%
1807441 243.1.1.37 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C 0.59 48.0 4.45e-01 93.8% 91.7%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.59 46.0 4.10e-01 100.0% 59.1%
4623792 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.59 50.0 4.41e-01 98.8% 84.8%
3678767 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 52.0 4.66e-01 100.0% 98.3%
3958357 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.58 48.0 4.53e-01 92.6% 99.0%
3165037 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 50.0 4.18e-01 100.0% 71.3%
4980660 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 51.0 4.65e-01 100.0% 84.5%
2227 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.27e-01 95.1% 24.5%
4379531 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.58 51.0 3.90e-01 100.0% 42.1%
4353676 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.58 51.0 4.34e-01 100.0% 60.7%
4929919 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 49.0 4.68e-01 96.3% 100.0%
4960252 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 48.0 4.29e-01 95.1% 98.3%
4958220 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 49.0 4.31e-01 100.0% 81.5%
4436162 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.57 49.0 4.30e-01 100.0% 79.2%
4976136 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 46.0 4.38e-01 98.8% 75.8%
3711119 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.57 47.0 4.17e-01 100.0% 62.6%
4974736 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 46.0 3.90e-01 98.8% 51.0%
3961706 4.1.1.161 beta barrels › SH3 › SH3 › SH3 › DUF4178 0.57 41.0 4.47e-01 92.6% 96.9%
4945458 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.72e-01 100.0% 94.9%
4250269 231.1.1.3 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.56 46.0 2.77e-01 90.1% 65.2%
3214004 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 46.0 4.37e-01 92.6% 91.0%
4950845 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 48.0 4.41e-01 98.8% 89.1%
4073461 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.56 34.0 2.69e-01 72.8% 25.3%
3284847 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.56 47.0 4.30e-01 93.8% 93.5%
3587653 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 4.06e-01 92.6% 87.5%
3833801 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 45.0 4.56e-01 92.6% 93.8%
3789364 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.05e-01 95.1% 20.0%
142524 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.55 45.0 3.65e-01 93.8% 96.0%
3982478 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 4.07e-01 100.0% 77.8%
2516709 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.55 47.0 3.78e-01 100.0% 79.8%
4067255 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.55 40.0 3.96e-01 100.0% 74.1%
3969155 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.55 47.0 3.91e-01 100.0% 54.8%
3601880 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.54 38.0 3.28e-01 100.0% 45.4%
3967450 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.54 44.0 3.55e-01 93.8% 92.8%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.54 39.0 4.21e-01 80.2% 95.4%
3253090 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 43.0 3.98e-01 91.4% 94.5%
2796929 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.54 46.0 4.18e-01 100.0% 76.9%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 2.75e-01 86.4% 22.7%
3789520 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.53 45.0 3.93e-01 100.0% 67.4%
5009761 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.53 47.0 3.91e-01 100.0% 73.1%
3273514 243.1.1.36 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.53 44.0 3.89e-01 96.3% 85.4%
3224488 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.53 46.0 3.96e-01 96.3% 93.1%
3271321 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 44.0 3.82e-01 96.3% 82.2%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 35.0 4.02e-01 71.6% 100.0%
3914399 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.53 45.0 3.32e-01 100.0% 44.2%
4953130 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.52 42.0 4.15e-01 93.8% 84.4%
4878713 331.3.1.42 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C 0.52 42.0 3.96e-01 91.4% 99.0%
3257116 243.1.1.36 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.52 42.0 3.92e-01 95.1% 99.1%
5055280 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 45.0 3.79e-01 100.0% 59.3%
3960286 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.52 38.0 3.82e-01 100.0% 74.1%