Back to structures

IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630086

Arc-Vir

IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630086

Quality

67.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-104
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.73 58.0 4.10e-01 84.9% 99.2%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.66 41.0 4.13e-01 100.0% 61.4%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 53.0 4.77e-01 91.9% 86.0%
2icgA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.60 39.0 3.20e-01 90.7% 35.8%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.60 52.0 3.69e-01 100.0% 61.3%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 33.0 3.47e-01 88.4% 57.5%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.59 38.0 3.30e-01 77.9% 40.0%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.58 40.0 4.05e-01 70.9% 89.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 3.31e-01 96.5% 80.2%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.36e-01 100.0% 37.5%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.56 37.0 3.81e-01 74.4% 71.2%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 51.0 3.39e-01 100.0% 32.4%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 44.0 4.04e-01 86.0% 64.9%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 33.0 3.92e-01 89.5% 100.0%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.88e-01 94.2% 65.6%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 39.0 3.80e-01 73.3% 74.7%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 50.0 3.32e-01 100.0% 25.1%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 40.0 2.89e-01 77.9% 53.2%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.74e-01 93.0% 64.7%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 41.0 3.77e-01 81.4% 61.2%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 49.0 3.27e-01 100.0% 35.7%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 41.0 4.20e-01 94.2% 84.7%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 49.0 3.06e-01 100.0% 26.1%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.77e-01 89.5% 86.0%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.87e-01 96.5% 63.7%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 35.0 3.65e-01 75.6% 74.0%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 37.0 3.37e-01 73.3% 52.9%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 48.0 3.21e-01 100.0% 30.9%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 48.0 3.28e-01 100.0% 33.7%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 3.07e-01 89.5% 92.6%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.77e-01 88.4% 100.0%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 33.0 3.41e-01 100.0% 67.1%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.62e-01 90.7% 65.3%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 41.0 3.84e-01 86.0% 70.9%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.53e-01 88.4% 68.9%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 47.0 3.32e-01 100.0% 36.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.52 39.0 3.72e-01 79.1% 84.0%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.29e-01 91.9% 54.1%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.68e-01 88.4% 75.4%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 41.0 3.75e-01 86.0% 64.3%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.79e-01 90.7% 73.6%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.59e-01 88.4% 72.1%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 46.0 3.26e-01 98.8% 48.9%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 3.07e-01 100.0% 34.7%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.61e-01 88.4% 74.8%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 41.0 3.72e-01 87.2% 66.1%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.66e-01 90.7% 71.7%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.69e-01 90.7% 76.1%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.76e-01 90.7% 72.5%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.47e-01 75.6% 98.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3763863 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 50.0 5.03e-01 83.7% 72.9%
5060665 5.1.11.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel 0.71 51.0 2.88e-01 97.7% 7.3%
3871241 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.66 51.0 3.52e-01 80.2% 35.0%
3905680 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.63 51.0 3.23e-01 83.7% 23.3%
3663326 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 54.0 5.03e-01 94.2% 82.9%
4649120 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.62 44.0 3.16e-01 75.6% 89.8%
3742310 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.61 54.0 3.63e-01 98.8% 26.9%
4082107 7089.1.1.3 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.60 42.0 4.62e-01 83.7% 88.6%
3414719 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.60 46.0 3.17e-01 82.6% 100.0%
3647333 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.59 48.0 4.57e-01 91.9% 75.0%
2983288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 32.0 3.16e-01 88.4% 50.6%
5044412 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 44.0 3.28e-01 82.6% 89.8%
4947529 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.58 52.0 3.73e-01 100.0% 64.0%
4269673 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.57 52.0 3.76e-01 100.0% 66.3%
3266245 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.46e-01 95.3% 78.3%
4271896 5.1.3.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated 0.57 52.0 3.54e-01 98.8% 39.6%
4393929 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 48.0 3.32e-01 98.8% 65.3%
3610069 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 40.0 2.99e-01 73.3% 35.8%
4927100 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 39.0 3.90e-01 93.0% 68.9%
2003 12.2.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.56 44.0 4.04e-01 84.9% 64.6%
3602202 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 50.0 3.80e-01 96.5% 57.4%
4147983 5.1.4.126 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Striatin 0.56 51.0 3.31e-01 100.0% 27.2%
3705541 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.46e-01 90.7% 99.0%
3593907 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.45e-01 100.0% 43.1%
3887377 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.55 40.0 2.80e-01 75.6% 23.2%
3592221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.02e-01 87.2% 89.8%
3452543 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 50.0 3.29e-01 100.0% 33.6%
4072406 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.55 49.0 3.60e-01 100.0% 68.1%
3640780 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 50.0 3.18e-01 100.0% 24.2%
None 0.55 50.0 3.36e-01 100.0% 29.8%
3992505 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.55 43.0 3.08e-01 84.9% 34.1%
3288873 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.55 49.0 3.27e-01 100.0% 32.3%
3210247 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 50.0 3.22e-01 100.0% 26.5%
3736971 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.54 49.0 3.18e-01 100.0% 31.2%
3605869 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.54 43.0 3.07e-01 86.0% 31.9%
3262446 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.54 41.0 4.01e-01 86.0% 75.3%
3794367 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.54 49.0 3.65e-01 100.0% 57.7%
4102064 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.54 40.0 3.77e-01 88.4% 63.8%
3941306 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.54 49.0 3.21e-01 100.0% 36.3%
3301493 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.54 46.0 3.83e-01 100.0% 97.0%
4000493 6129.1.1.9 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.53 43.0 3.52e-01 91.9% 60.6%
4187379 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.41e-01 74.4% 77.5%
3186223 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 48.0 3.36e-01 100.0% 37.8%
4971345 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.63e-01 75.6% 88.0%
4279385 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 35.0 3.31e-01 96.5% 56.2%
3619880 5.1.3.140 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL, DUF5128 0.52 47.0 3.19e-01 100.0% 39.7%
5017944 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.15e-01 100.0% 56.2%
1271490 12.2.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.52 41.0 3.75e-01 86.0% 64.3%
2002 12.2.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.52 40.0 3.86e-01 83.7% 76.0%
3503177 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.94e-01 100.0% 39.5%
1076327 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 43.0 3.57e-01 90.7% 68.0%
4332836 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.91e-01 98.8% 28.1%
4004717 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.51 36.0 3.39e-01 88.4% 58.2%
3916301 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 41.0 3.64e-01 89.5% 74.6%
3597540 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 45.0 3.03e-01 100.0% 36.9%
4946840 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.45e-01 77.9% 67.8%
4433757 3347.1.1.3 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531 0.51 46.0 2.89e-01 100.0% 59.3%
3495285 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.51 40.0 3.42e-01 87.2% 51.3%
4210618 3735.1.1.12 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.51 46.0 2.87e-01 100.0% 59.3%
3962065 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 45.0 3.21e-01 96.5% 57.6%
3797509 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 41.0 3.54e-01 90.7% 74.5%
3991202 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 42.0 3.58e-01 90.7% 68.6%
3599192 10.15.1.0 beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like 0.51 39.0 3.47e-01 82.6% 88.0%
1555767 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 42.0 3.56e-01 90.7% 70.2%
1548151 331.1.1.9 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › RepD-like_N 0.50 37.0 3.65e-01 81.4% 72.6%
3591336 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.50 41.0 3.78e-01 90.7% 67.0%