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IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630092

Arc-Vir

IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630092

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01667.24 best Ribosomal_S27e 64.4 8.30e-18 100.0% 78.2%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzm600 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.90 83.0 7.01e-01 100.0% 63.7%
1qxfA00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.89 80.0 7.64e-01 100.0% 86.2%
5xyib00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.83 74.0 6.31e-01 100.0% 62.2%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.75 51.0 5.68e-01 96.1% 97.3%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.69 55.0 5.83e-01 94.1% 100.0%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.68 54.0 5.51e-01 100.0% 89.8%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.66 55.0 5.70e-01 98.0% 100.0%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 41.0 3.50e-01 96.1% 41.7%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.62 49.0 4.96e-01 100.0% 90.0%
1m2gA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.61 42.0 3.57e-01 94.1% 40.9%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 52.0 4.76e-01 100.0% 80.3%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 51.0 4.67e-01 100.0% 80.6%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 47.0 4.64e-01 88.2% 82.1%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 52.0 5.12e-01 100.0% 90.9%
5v6rA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 49.0 3.93e-01 96.1% 82.6%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.59 39.0 4.26e-01 98.0% 92.1%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.58 52.0 4.40e-01 100.0% 81.7%
8ajqA01 3.90.1590.10 Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) 0.56 44.0 3.53e-01 92.2% 75.7%
1vd4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 44.0 4.15e-01 96.1% 72.6%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 39.0 3.05e-01 78.4% 50.4%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.56 46.0 3.51e-01 100.0% 39.3%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.56 43.0 3.49e-01 96.1% 44.4%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 4.42e-01 94.1% 97.7%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 42.0 3.87e-01 100.0% 65.7%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 42.0 3.59e-01 100.0% 100.0%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.54 39.0 3.27e-01 100.0% 42.0%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 45.0 3.77e-01 100.0% 95.9%
6rxpA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.53 43.0 3.58e-01 94.1% 52.6%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.06e-01 100.0% 37.7%
2wv3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.01e-01 76.5% 77.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030111 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.97 90.0 8.22e-01 100.0% 78.1%
5027043 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.97 81.0 8.64e-01 90.2% 100.0%
4934222 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.97 90.0 7.99e-01 100.0% 73.5%
5044354 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.96 89.0 7.63e-01 98.0% 68.0%
5039411 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.96 90.0 8.21e-01 100.0% 79.7%
1421567 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.92 85.0 8.25e-01 100.0% 91.1%
3600162 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.91 85.0 7.13e-01 100.0% 63.7%
5067513 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.91 84.0 8.23e-01 100.0% 94.5%
3506203 375.1.1.202 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.86 55.0 6.39e-01 90.2% 97.1%
5071572 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 74.0 6.81e-01 96.1% 75.4%
4008953 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 54.0 6.26e-01 94.1% 97.1%
4019034 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.83 55.0 6.01e-01 96.1% 87.5%
1438051 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.83 74.0 6.17e-01 100.0% 60.5%
3612071 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 55.0 5.87e-01 76.5% 80.0%
4024048 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.80 54.0 5.61e-01 98.0% 75.0%
5040368 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 51.0 5.82e-01 80.4% 97.1%
3592749 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 52.0 5.53e-01 82.4% 80.0%
4328597 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 58.0 6.14e-01 100.0% 91.1%
3213738 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.76 48.0 5.54e-01 82.4% 94.3%
3743128 4135.1.1.0 beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.76 69.0 4.97e-01 100.0% 45.9%
4475754 4076.2.1.5 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP 0.75 56.0 5.18e-01 100.0% 63.1%
4263982 375.1.1.302 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.75 56.0 5.49e-01 100.0% 74.5%
5034313 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 49.0 5.55e-01 74.5% 100.0%
3230674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 57.0 5.97e-01 100.0% 95.6%
4953501 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 52.0 5.65e-01 100.0% 97.5%
3995440 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.73 46.0 5.26e-01 82.4% 94.3%
3040112 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.73 49.0 5.02e-01 98.0% 72.0%
5034626 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 51.0 5.66e-01 82.4% 95.0%
5056189 375.1.1.77 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.71 48.0 5.24e-01 96.1% 92.5%
3440046 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 48.0 5.26e-01 96.1% 92.5%
4993851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 56.0 5.89e-01 100.0% 97.8%
4322207 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 46.0 5.19e-01 92.2% 100.0%
3602534 375.1.1.199 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 0.70 49.0 5.31e-01 94.1% 95.0%
5029687 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.75e-01 84.3% 97.8%
3433661 375.1.1.51 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.69 49.0 5.33e-01 100.0% 97.5%
3620613 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 51.0 5.32e-01 100.0% 93.3%
3401929 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 50.0 5.44e-01 94.1% 100.0%
5048049 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 47.0 5.17e-01 96.1% 92.5%
3462740 375.1.1.51 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.68 48.0 5.15e-01 98.0% 95.0%
4943704 375.12.1.0 few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.67 44.0 4.15e-01 92.2% 53.8%
3809044 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 48.0 5.00e-01 98.0% 86.7%
4126506 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.67 48.0 4.85e-01 100.0% 78.0%
4180999 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 50.0 5.30e-01 94.1% 93.3%
3718984 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.67 50.0 4.68e-01 94.1% 64.6%
5044292 375.11.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ 0.67 45.0 4.20e-01 94.1% 55.4%
5019693 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.67 57.0 5.76e-01 100.0% 96.0%
4853382 375.1.1.138 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › IBR_2 0.66 46.0 4.36e-01 86.3% 60.3%
4099915 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.66 43.0 4.80e-01 88.2% 97.1%
5052663 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.96e-01 96.1% 95.0%
4666101 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 44.0 4.61e-01 98.0% 80.0%
4960524 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 5.10e-01 98.0% 91.1%
4190103 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.65 43.0 4.76e-01 92.2% 94.7%
3594031 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 52.0 5.14e-01 100.0% 83.6%
4943977 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 5.22e-01 96.1% 100.0%
5015962 375.1.1.64 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.64 52.0 5.31e-01 100.0% 92.0%
4470805 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.64 43.0 2.80e-01 96.1% 14.8%
4948562 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 41.0 4.29e-01 82.4% 75.6%
5058002 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 48.0 3.53e-01 100.0% 31.3%
5066701 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 4.93e-01 96.1% 100.0%
3277720 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.62 43.0 4.66e-01 96.1% 97.5%
4103847 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.62 43.0 3.62e-01 100.0% 41.1%
4836960 375.5.1.1 few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.61 44.0 4.03e-01 98.0% 56.3%
3388528 7056.1.1.0 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.61 42.0 4.52e-01 100.0% 97.5%
4518520 375.1.2.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.60 39.0 4.30e-01 94.1% 97.1%
3392420 221.1.1.67 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Plexin_RBD 0.60 50.0 3.95e-01 96.1% 80.9%
4929321 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.17e-01 100.0% 65.0%
4163860 375.1.1.199 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 0.57 45.0 4.70e-01 92.2% 100.0%
4946781 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.72e-01 92.2% 100.0%
3778889 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.55 37.0 2.89e-01 74.5% 60.0%
3626657 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 41.0 3.32e-01 100.0% 43.6%
3275234 11.1.4.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 0.51 44.0 3.51e-01 100.0% 46.4%
3581246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.33e-01 100.0% 45.7%
3598873 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 43.0 3.41e-01 100.0% 49.1%