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IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630095
Arc-VirIMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630095
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-167
Domain cluster:
rep: NC_023703.1__YP_009013597.1__DORI_47__00047__D8-227
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01351.26 best | RNase_HII | 39.0 | 1.10e-09 | 98.8% | 73.4% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p5jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.87 | 80.0 | 7.51e-01 | 100.0% | 81.6% |
| 1i39A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.87 | 75.0 | 7.70e-01 | 100.0% | 93.5% |
| 2d0bA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 80.0 | 7.07e-01 | 100.0% | 71.7% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 76.0 | 7.06e-01 | 100.0% | 76.4% |
| 3vn5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.84 | 71.0 | 6.73e-01 | 100.0% | 76.3% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.83 | 79.0 | 7.75e-01 | 100.0% | 94.2% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.65 | 44.0 | 4.96e-01 | 97.5% | 89.5% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.64 | 42.0 | 4.69e-01 | 96.3% | 83.7% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 42.0 | 4.74e-01 | 94.4% | 95.8% |
| 1t6cA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 41.0 | 4.61e-01 | 94.4% | 92.8% |
| 1vjtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 32.0 | 3.72e-01 | 98.8% | 72.4% |
| 3cerC01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 41.0 | 4.53e-01 | 95.7% | 92.2% |
| 3mdqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 42.0 | 4.69e-01 | 96.9% | 98.4% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.57 | 35.0 | 4.14e-01 | 93.2% | 87.7% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.57 | 39.0 | 4.33e-01 | 98.8% | 87.1% |
| 7ch9L01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.56 | 27.0 | 3.53e-01 | 90.7% | 82.8% |
| 3vovA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 46.0 | 4.73e-01 | 88.9% | 98.7% |
| 6d92A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 50.0 | 4.35e-01 | 100.0% | 91.8% |
| 6m37B01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.53 | 30.0 | 3.72e-01 | 87.7% | 89.8% |
| 2yhwA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 45.0 | 4.52e-01 | 90.7% | 98.2% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 44.0 | 4.43e-01 | 100.0% | 86.1% |
| 7rheA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 4.56e-01 | 94.4% | 93.1% |
| 2rbgA00 | 3.40.50.11100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 38.0 | 4.32e-01 | 100.0% | 96.8% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 4.45e-01 | 100.0% | 90.6% |
| 1jceA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 43.0 | 4.42e-01 | 98.1% | 92.2% |
| 2f9sB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 31.0 | 3.40e-01 | 99.4% | 70.6% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 39.0 | 2.82e-01 | 79.6% | 69.7% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 3.49e-01 | 90.7% | 53.1% |
| 1qfjA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 38.0 | 4.11e-01 | 90.1% | 92.6% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 41.0 | 4.17e-01 | 99.4% | 89.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995983 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 82.0 | 6.97e-01 | 100.0% | 62.4% |
| 3838396 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 75.0 | 6.96e-01 | 100.0% | 71.8% |
| 4947312 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 79.0 | 7.11e-01 | 99.4% | 70.5% |
| 3607891 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 84.0 | 7.06e-01 | 100.0% | 63.6% |
| 3593247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.89 | 84.0 | 7.10e-01 | 100.0% | 64.9% |
| 3248200 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 83.0 | 7.24e-01 | 100.0% | 68.7% |
| 405856 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 59.0 | 6.61e-01 | 71.6% | 85.2% |
| 4993672 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 81.0 | 7.30e-01 | 100.0% | 73.8% |
| 4945436 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 78.0 | 6.95e-01 | 98.8% | 69.3% |
| 4956142 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.87 | 77.0 | 7.84e-01 | 100.0% | 93.8% |
| 3626299 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 82.0 | 6.57e-01 | 100.0% | 56.1% |
| 4315682 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 82.0 | 7.19e-01 | 99.4% | 72.0% |
| 4053614 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 77.0 | 6.68e-01 | 100.0% | 65.8% |
| 1837475 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 76.0 | 6.98e-01 | 100.0% | 74.5% |
| 4998267 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 80.0 | 7.37e-01 | 100.0% | 79.0% |
| 5046769 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 80.0 | 7.24e-01 | 100.0% | 76.1% |
| 4682851 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 77.0 | 6.87e-01 | 100.0% | 70.0% |
| None | — | 0.85 | 70.0 | 6.52e-01 | 100.0% | 70.8% | |
| 5004347 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 78.0 | 6.79e-01 | 100.0% | 73.4% |
| 5043207 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.81 | 75.0 | 6.57e-01 | 100.0% | 69.3% |
| 5031007 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.68 | 46.0 | 5.13e-01 | 96.3% | 88.8% |
| 4932883 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 44.0 | 4.92e-01 | 97.5% | 87.2% |
| 3189096 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.61 | 40.0 | 4.40e-01 | 91.4% | 82.3% |
| 4158783 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.57 | 43.0 | 4.71e-01 | 96.9% | 94.1% |
| 991597 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.56 | 35.0 | 4.08e-01 | 93.2% | 87.7% |
| 2845074 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.55 | 40.0 | 4.39e-01 | 94.4% | 93.8% |
| 3281276 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.54 | 49.0 | 4.59e-01 | 96.9% | 84.1% |
| 4937064 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.54 | 47.0 | 3.83e-01 | 95.1% | 56.1% |
| 2792047 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.54 | 34.0 | 3.68e-01 | 92.6% | 75.8% |
| 4543638 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.53 | 43.0 | 4.36e-01 | 100.0% | 84.8% |
| 4030456 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 48.0 | 4.17e-01 | 96.9% | 82.5% |
| 4610182 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.53 | 44.0 | 4.17e-01 | 100.0% | 74.2% |
| 4038287 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.53 | 38.0 | 4.13e-01 | 99.4% | 88.9% |
| 4296237 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.51 | 42.0 | 4.35e-01 | 100.0% | 91.0% |
| 4292358 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.51 | 41.0 | 4.12e-01 | 100.0% | 84.8% |
| 4162179 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.51 | 41.0 | 4.27e-01 | 99.4% | 90.3% |
| 4638438 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.50 | 41.0 | 4.19e-01 | 100.0% | 89.4% |