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IMGVR_UViG_3300016705_000470-3300016705-Ga0181507_14051267
Arc-VirIMGVR_UViG_3300016705_000470-3300016705-Ga0181507_14051267
Identity
- Kingdom:
- archaea
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 63-139
Domain cluster:
rep: OP596614.1__WAX24411.1__X__00038__D61-134
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lvaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 34.0 | 3.79e-01 | 84.4% | 54.8% |
| 1hciA03 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 46.0 | 3.98e-01 | 77.9% | 50.8% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 44.0 | 4.02e-01 | 76.6% | 59.4% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 3.93e-01 | 81.8% | 56.1% |
| 4lwsB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 43.0 | 4.17e-01 | 77.9% | 69.3% |
| 2jbrA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 47.0 | 3.66e-01 | 90.9% | 75.1% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 41.0 | 3.78e-01 | 81.8% | 54.3% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 53.0 | 5.26e-01 | 100.0% | 100.0% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.58 | 43.0 | 4.31e-01 | 77.9% | 79.2% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.58 | 42.0 | 3.66e-01 | 77.9% | 97.6% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.58 | 37.0 | 3.58e-01 | 93.5% | 57.3% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.57 | 42.0 | 3.49e-01 | 79.2% | 66.2% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 34.0 | 2.87e-01 | 100.0% | 35.7% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.57 | 44.0 | 4.37e-01 | 87.0% | 80.5% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.56 | 40.0 | 3.62e-01 | 81.8% | 54.7% |
| 1xwmA00 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 47.0 | 3.45e-01 | 93.5% | 66.0% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.55 | 44.0 | 2.89e-01 | 89.6% | 72.1% |
| 2mw2A00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.55 | 32.0 | 3.40e-01 | 88.3% | 64.2% |
| 2o8iA00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.55 | 43.0 | 3.41e-01 | 84.4% | 76.0% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.55 | 40.0 | 3.97e-01 | 87.0% | 72.9% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.54 | 40.0 | 3.61e-01 | 80.5% | 81.4% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 4.18e-01 | 80.5% | 90.3% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.54 | 39.0 | 3.71e-01 | 80.5% | 65.2% |
| 6ko8A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.28e-01 | 89.6% | 90.3% |
| 2lorA00 | 1.10.3350.20 | Mainly Alpha › Orthogonal Bundle › HP0242-like fold › Tmem141 protein family | 0.52 | 40.0 | 3.69e-01 | 87.0% | 80.6% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 3.38e-01 | 77.9% | 55.5% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.52 | 37.0 | 3.69e-01 | 88.3% | 73.2% |
| 2mjmA00 | 1.10.533.20 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › | 0.51 | 35.0 | 3.27e-01 | 74.0% | 75.2% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.50 | 37.0 | 3.50e-01 | 81.8% | 65.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3097398 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.91 | 71.0 | 5.92e-01 | 87.0% | 50.8% |
| 2899305 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.89 | 74.0 | 6.14e-01 | 88.3% | 54.8% |
| 3304140 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.66 | 45.0 | 3.10e-01 | 71.4% | 45.1% |
| 4034260 | 605.1.1.12 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4870 | 0.60 | 49.0 | 4.31e-01 | 92.2% | 68.3% |
| 3885217 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.59 | 46.0 | 4.70e-01 | 88.3% | 88.0% |
| 3752435 | 109.4.1.920 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2 | 0.59 | 43.0 | 2.76e-01 | 79.2% | 19.4% |
| 4639996 | 150.7.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE | 0.59 | 46.0 | 4.40e-01 | 87.0% | 73.3% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.58 | 42.0 | 4.10e-01 | 77.9% | 71.8% |
| 3968999 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.57 | 46.0 | 2.88e-01 | 89.6% | 60.4% |
| 3278291 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.57 | 41.0 | 3.98e-01 | 77.9% | 71.1% |
| 4362692 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.56 | 38.0 | 3.54e-01 | 77.9% | 55.0% |
| 4979981 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.56 | 43.0 | 3.82e-01 | 81.8% | 73.6% |
| 3406066 | 6076.1.1.0 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme | 0.56 | 46.0 | 4.50e-01 | 93.5% | 92.9% |
| 1293726 | 150.7.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE | 0.56 | 43.0 | 4.19e-01 | 87.0% | 77.6% |
| 3277932 | 150.5.1.52 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE | 0.56 | 41.0 | 3.95e-01 | 81.8% | 67.8% |
| 4219465 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.55 | 42.0 | 3.77e-01 | 81.8% | 62.7% |
| 4031068 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.55 | 42.0 | 4.11e-01 | 87.0% | 75.3% |
| 3861313 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 42.0 | 3.70e-01 | 81.8% | 64.3% |
| 3530312 | 2485.1.1.120 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Strabismus | 0.55 | 44.0 | 3.80e-01 | 90.9% | 96.9% |
| 3404343 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.54 | 44.0 | 4.17e-01 | 88.3% | 93.3% |
| 3399338 | 605.1.1.24 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › ACP53EA | 0.52 | 37.0 | 3.52e-01 | 77.9% | 97.0% |
| 3542170 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.52 | 35.0 | 3.56e-01 | 90.9% | 68.8% |
| 3584894 | 605.1.1.238 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › CNNM | 0.52 | 38.0 | 3.64e-01 | 77.9% | 71.1% |