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IMGVR_UViG_3300017482_000059-3300017482-Ga0186907_1311938

Arc-Vir

IMGVR_UViG_3300017482_000059-3300017482-Ga0186907_1311938

Quality

68.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-49
PDB
D2 high residues 55-135
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.82 60.0 4.71e-01 75.3% 74.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.73 52.0 4.22e-01 72.8% 95.0%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.73 58.0 4.41e-01 84.0% 67.8%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.71 52.0 4.75e-01 76.5% 79.0%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.71 56.0 3.84e-01 84.0% 85.4%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.70 57.0 3.57e-01 86.4% 46.4%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.70 54.0 3.75e-01 82.7% 54.6%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 53.0 4.54e-01 82.7% 81.7%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 52.0 4.19e-01 81.5% 85.2%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.69 43.0 4.56e-01 79.0% 72.9%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.68 58.0 4.75e-01 93.8% 64.4%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.66 48.0 4.37e-01 82.7% 58.7%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.66 51.0 3.12e-01 84.0% 48.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 51.0 3.63e-01 82.7% 78.3%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 53.0 4.32e-01 92.6% 83.2%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.64 48.0 3.43e-01 79.0% 60.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.63 43.0 3.91e-01 70.4% 95.5%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 47.0 3.77e-01 81.5% 67.7%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.62 57.0 4.66e-01 100.0% 86.7%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.61 47.0 4.52e-01 90.1% 72.2%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 54.0 3.69e-01 97.5% 88.4%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 54.0 3.51e-01 100.0% 95.8%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 44.0 2.97e-01 77.8% 84.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 36.0 4.40e-01 96.3% 100.0%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 44.0 4.01e-01 77.8% 79.6%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 4.12e-01 87.7% 70.8%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 47.0 4.06e-01 85.2% 72.9%
2ivfC00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 3.19e-01 75.3% 70.1%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 43.0 4.26e-01 77.8% 83.0%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.31e-01 96.3% 87.7%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.97e-01 86.4% 70.4%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.26e-01 75.3% 85.3%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.78e-01 88.9% 62.5%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 3.05e-01 86.4% 35.5%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.01e-01 100.0% 52.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 45.0 3.07e-01 86.4% 36.2%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 4.50e-01 91.4% 100.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 3.58e-01 95.1% 77.3%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.57 48.0 3.95e-01 95.1% 81.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 49.0 4.21e-01 97.5% 74.2%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.34e-01 98.8% 57.7%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.86e-01 91.4% 89.5%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.56 43.0 3.92e-01 88.9% 62.0%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 3.77e-01 75.3% 91.8%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.74e-01 88.9% 77.3%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 3.93e-01 96.3% 87.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.65e-01 93.8% 86.5%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.65e-01 91.4% 81.1%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.55 42.0 3.44e-01 84.0% 79.0%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.78e-01 79.0% 83.5%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.89e-01 100.0% 63.5%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.92e-01 93.8% 85.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 29.0 3.21e-01 84.0% 65.6%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.62e-01 81.5% 90.2%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.81e-01 87.7% 94.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.76 53.0 5.35e-01 71.6% 87.5%
3705072 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.76 52.0 4.58e-01 70.4% 90.4%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.75 53.0 3.83e-01 81.5% 28.1%
3605378 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.75 51.0 4.58e-01 70.4% 91.8%
3262165 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.74 55.0 3.68e-01 77.8% 71.9%
3230195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 57.0 3.74e-01 84.0% 48.4%
3482926 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.73 59.0 4.46e-01 85.2% 81.7%
4334199 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.71 52.0 4.46e-01 76.5% 67.2%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 61.0 5.82e-01 95.1% 98.9%
3572186 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.70 55.0 3.73e-01 84.0% 77.9%
5046652 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.70 57.0 4.34e-01 87.7% 93.5%
4031410 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.70 59.0 4.53e-01 91.4% 55.6%
4408604 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.69 55.0 3.79e-01 84.0% 38.4%
3239992 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.69 55.0 4.20e-01 86.4% 62.2%
3391005 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 54.0 3.54e-01 85.2% 39.4%
4012865 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.67 50.0 4.00e-01 77.8% 73.5%
3778085 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 59.0 3.77e-01 98.8% 88.1%
3596663 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.66 50.0 3.42e-01 80.2% 47.6%
3296838 4099.1.1.14 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Knl1_RWD_C 0.66 60.0 5.70e-01 98.8% 89.5%
185095 6057.1.1.1 beta sandwiches › Uncharacterized protein BAS0735 › Uncharacterized protein BAS0735 › Uncharacterized protein BAS0735 › DUF3238 0.66 49.0 3.79e-01 81.5% 94.3%
4247114 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.65 51.0 3.80e-01 84.0% 87.5%
3214007 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 54.0 4.77e-01 95.1% 86.4%
5003245 243.8.1.0 a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.65 48.0 5.10e-01 79.0% 95.7%
1724304 9.1.1.30 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_like 0.65 52.0 4.80e-01 98.8% 68.9%
3211589 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 46.0 3.75e-01 74.1% 84.8%
4030498 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.64 50.0 4.13e-01 86.4% 68.0%
3210000 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 48.0 3.00e-01 80.2% 21.0%
3929071 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 49.0 4.22e-01 82.7% 80.0%
4638995 71.1.1.15 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.63 50.0 3.78e-01 86.4% 50.0%
3415592 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.63 54.0 4.32e-01 92.6% 74.0%
2773872 5.1.5.79 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WDR90_beta-prop_4th 0.62 49.0 3.26e-01 86.4% 33.3%
2755883 331.19.1.1 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin 0.61 46.0 4.47e-01 90.1% 70.7%
3628265 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.14e-01 90.1% 92.0%
3580950 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 50.0 3.43e-01 88.9% 35.9%
4021604 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.60 53.0 4.57e-01 97.5% 92.8%
3061935 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.59 49.0 4.66e-01 93.8% 100.0%
3226497 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 50.0 4.51e-01 96.3% 77.4%
3587732 9.6.1.0 beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin 0.58 43.0 3.99e-01 81.5% 73.6%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.58 47.0 4.25e-01 93.8% 90.8%
3258731 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.58 47.0 4.01e-01 92.6% 70.0%
3977419 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.57 47.0 4.41e-01 88.9% 79.0%
4364087 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.57 47.0 4.19e-01 88.9% 71.3%
3165403 4958.1.1.0 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.57 40.0 4.33e-01 91.4% 90.8%
3196889 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 48.0 2.98e-01 92.6% 19.8%
6331 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 49.0 4.20e-01 97.5% 73.7%
3716632 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 48.0 3.94e-01 92.6% 96.6%
3386462 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 47.0 4.35e-01 95.1% 80.0%
3240511 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 40.0 3.74e-01 77.8% 92.4%
4025728 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 43.0 3.84e-01 85.2% 86.1%
3600210 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.14e-01 100.0% 89.6%
3311264 79.1.1.27 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.54 38.0 3.73e-01 86.4% 68.2%
3220909 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 39.0 3.52e-01 81.5% 62.5%