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IMGVR_UViG_3300017482_000059-3300017482-Ga0186907_131197

Arc-Vir

IMGVR_UViG_3300017482_000059-3300017482-Ga0186907_131197

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-109
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 56.0 4.98e-01 84.9% 94.7%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 54.0 4.78e-01 84.9% 88.1%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 55.0 4.75e-01 84.9% 91.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 53.0 4.83e-01 84.9% 94.5%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 56.0 4.90e-01 87.1% 94.0%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 55.0 4.72e-01 87.1% 90.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 51.0 4.58e-01 84.9% 94.9%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 52.0 3.64e-01 83.9% 68.9%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.65 50.0 4.23e-01 81.7% 93.3%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 4.56e-01 84.9% 92.3%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 4.60e-01 84.9% 95.2%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.64 45.0 3.51e-01 74.2% 87.1%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 52.0 4.63e-01 87.1% 95.3%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 47.0 3.34e-01 80.6% 59.0%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 46.0 3.25e-01 77.4% 63.4%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 47.0 3.42e-01 80.6% 65.2%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.61 43.0 3.82e-01 82.8% 51.1%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 42.0 3.26e-01 71.0% 43.0%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.60 46.0 3.58e-01 80.6% 60.1%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 45.0 3.35e-01 80.6% 91.0%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 43.0 4.34e-01 78.5% 81.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.58 40.0 3.21e-01 73.1% 37.6%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 45.0 4.54e-01 84.9% 93.7%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.57 43.0 3.23e-01 80.6% 68.1%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.57 48.0 4.00e-01 92.5% 71.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.57 44.0 4.34e-01 82.8% 80.0%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.56 47.0 4.01e-01 92.5% 84.7%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 43.0 4.52e-01 84.9% 91.6%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 39.0 3.76e-01 72.0% 88.7%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 38.0 3.26e-01 71.0% 58.8%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.68e-01 80.6% 77.1%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 3.71e-01 81.7% 64.7%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 49.0 4.56e-01 100.0% 90.0%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.55 43.0 3.66e-01 86.0% 91.2%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 48.0 4.47e-01 100.0% 90.8%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.05e-01 76.3% 71.2%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 41.0 3.17e-01 83.9% 60.6%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.54 32.0 3.52e-01 80.6% 73.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 4.18e-01 98.9% 91.6%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 45.0 3.88e-01 93.5% 79.9%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.19e-01 78.5% 76.4%
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 36.0 3.07e-01 95.7% 43.6%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.12e-01 79.6% 73.4%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.23e-01 80.6% 76.7%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.23e-01 80.6% 83.4%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.07e-01 98.9% 99.2%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.52 39.0 2.84e-01 79.6% 93.8%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 45.0 4.16e-01 94.6% 86.4%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.07e-01 79.6% 72.7%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.51 30.0 3.43e-01 79.6% 78.3%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.44e-01 95.7% 93.9%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.13e-01 80.6% 78.0%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.06e-01 80.6% 75.9%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.50 44.0 3.74e-01 96.8% 81.0%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 3.05e-01 79.6% 74.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 58.0 3.91e-01 83.9% 29.8%
3984091 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.72 54.0 5.17e-01 78.5% 90.5%
826 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.70 56.0 4.98e-01 84.9% 94.7%
5013018 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.70 50.0 4.48e-01 75.3% 76.9%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.69 45.0 4.88e-01 71.0% 77.5%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 55.0 3.80e-01 83.9% 29.8%
3224579 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 54.0 3.73e-01 83.9% 29.6%
4614038 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.68 56.0 4.89e-01 86.0% 94.0%
4668044 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.68 55.0 4.82e-01 84.9% 94.0%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.67 54.0 4.84e-01 84.9% 93.8%
2552758 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.67 53.0 4.66e-01 84.9% 87.6%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 45.0 3.19e-01 78.5% 24.3%
3894563 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.66 53.0 4.77e-01 84.9% 93.0%
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 43.0 4.89e-01 73.1% 88.6%
3215166 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.65 54.0 5.42e-01 89.2% 100.0%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 53.0 4.72e-01 84.9% 92.8%
3929502 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 47.0 4.74e-01 76.3% 89.4%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.64 52.0 4.70e-01 86.0% 83.2%
4392904 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.64 50.0 3.46e-01 81.7% 69.3%
3733356 298.1.1.25 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C 0.64 52.0 4.30e-01 88.2% 93.3%
4492101 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.63 46.0 4.72e-01 78.5% 78.9%
3474457 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 43.0 4.32e-01 71.0% 96.8%
3596915 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.61 49.0 2.98e-01 84.9% 31.2%
5043414 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.59 53.0 4.67e-01 98.9% 94.8%
5046585 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.58 39.0 4.60e-01 74.2% 98.5%
3485287 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 41.0 3.13e-01 72.0% 41.0%
3938315 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 41.0 3.15e-01 74.2% 60.0%
3597007 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 46.0 3.73e-01 86.0% 86.1%
3995040 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 41.0 3.23e-01 77.4% 61.0%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.56 40.0 2.75e-01 75.3% 26.7%
3901787 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 42.0 3.38e-01 79.6% 74.3%
3799730 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 40.0 3.12e-01 76.3% 60.5%
4956163 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 43.0 3.50e-01 84.9% 75.6%
3793430 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 43.0 4.28e-01 83.9% 87.4%
3870346 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 41.0 3.28e-01 79.6% 77.3%
3901783 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 41.0 3.04e-01 79.6% 71.3%
3402727 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 41.0 3.27e-01 79.6% 73.9%
3214084 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 39.0 3.22e-01 78.5% 72.9%
3748485 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 42.0 3.32e-01 86.0% 57.9%
3271736 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 2.91e-01 75.3% 52.6%
4002330 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 39.0 3.04e-01 78.5% 62.0%
4972588 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.52 42.0 2.89e-01 86.0% 78.2%
3486389 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 39.0 3.12e-01 80.6% 76.8%
3411806 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.52 39.0 3.06e-01 80.6% 68.5%
3557419 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.51 39.0 3.09e-01 80.6% 74.2%
145656 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.51 39.0 3.06e-01 80.6% 75.9%
3870695 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.51 39.0 3.04e-01 80.6% 68.5%
3997293 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 38.0 3.04e-01 79.6% 72.4%
5045322 331.6.1.0 a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.51 42.0 3.82e-01 89.2% 70.4%
3465240 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 3.14e-01 100.0% 95.0%