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IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071036

Arc-Vir

IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071036

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-73
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.75 65.0 5.18e-01 97.1% 90.0%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.72 58.0 5.99e-01 100.0% 92.3%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 56.0 4.87e-01 84.1% 66.0%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.71 59.0 6.02e-01 100.0% 93.9%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 48.0 5.49e-01 76.8% 100.0%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 56.0 5.06e-01 84.1% 68.5%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.71 41.0 4.85e-01 94.2% 87.0%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.70 62.0 4.49e-01 100.0% 37.8%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.69 60.0 6.07e-01 100.0% 97.1%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 57.0 5.88e-01 98.6% 98.5%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 60.0 5.45e-01 98.6% 78.3%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 59.0 5.08e-01 100.0% 72.5%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 49.0 4.30e-01 82.6% 69.1%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 57.0 5.41e-01 98.6% 83.1%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 55.0 5.25e-01 98.6% 81.0%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 57.0 4.69e-01 100.0% 58.4%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 52.0 4.85e-01 94.2% 83.9%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 56.0 3.39e-01 98.6% 48.8%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.62 46.0 3.38e-01 79.7% 69.8%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 54.0 4.82e-01 100.0% 73.5%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 46.0 3.34e-01 81.2% 71.2%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.91e-01 76.8% 100.0%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 52.0 4.45e-01 98.6% 77.1%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 51.0 4.69e-01 100.0% 72.0%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 53.0 4.48e-01 100.0% 62.7%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 52.0 4.76e-01 97.1% 72.8%
3djlA03 2.40.110.20 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › 0.60 51.0 4.03e-01 100.0% 64.7%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 3.54e-01 78.3% 69.9%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 49.0 4.04e-01 100.0% 100.0%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 42.0 3.67e-01 78.3% 86.1%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 49.0 4.61e-01 98.6% 79.3%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.73e-01 82.6% 79.5%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.57 47.0 4.21e-01 100.0% 100.0%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 47.0 3.65e-01 95.7% 42.7%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.25e-01 73.9% 69.2%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 42.0 3.46e-01 84.1% 53.0%
1dm9A00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.53 46.0 4.07e-01 97.1% 79.8%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.83e-01 95.7% 59.5%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.53 33.0 3.77e-01 71.0% 91.5%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.74e-01 95.7% 57.0%
3e1tA02 3.30.9.100 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.53 37.0 2.90e-01 75.4% 77.1%
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 43.0 3.34e-01 95.7% 43.2%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 43.0 3.54e-01 92.8% 97.0%
4v19O00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.52 45.0 3.83e-01 97.1% 73.0%
2eaqA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 38.0 3.51e-01 78.3% 100.0%
3rp6A02 3.30.9.30 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.52 36.0 2.68e-01 76.8% 31.7%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 40.0 4.06e-01 95.7% 85.3%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 40.0 2.87e-01 87.0% 37.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 38.0 3.66e-01 100.0% 70.0%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.51 41.0 3.36e-01 92.8% 72.9%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.37e-01 92.8% 65.9%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 39.0 2.65e-01 85.5% 98.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5069810 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.78 58.0 5.49e-01 84.1% 67.5%
3698630 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.76 59.0 5.07e-01 82.6% 66.7%
3603182 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 56.0 5.35e-01 78.3% 73.8%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.75 54.0 5.19e-01 81.2% 66.7%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 46.0 4.99e-01 97.1% 74.1%
5016579 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 53.0 5.12e-01 81.2% 65.8%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 58.0 5.12e-01 84.1% 64.0%
4166012 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 57.0 5.59e-01 97.1% 76.0%
4963592 1.1.8.26 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › PF26503 0.74 52.0 5.24e-01 73.9% 78.6%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 56.0 5.52e-01 95.7% 74.7%
3589736 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 53.0 5.32e-01 75.4% 85.7%
3642150 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 57.0 5.10e-01 97.1% 60.0%
4350337 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 57.0 5.60e-01 97.1% 77.3%
4945827 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.73 55.0 5.01e-01 79.7% 67.8%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 57.0 5.62e-01 97.1% 78.7%
4988964 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 53.0 4.99e-01 78.3% 67.1%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 57.0 4.83e-01 97.1% 52.7%
4950268 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 52.0 5.49e-01 75.4% 90.0%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 55.0 5.34e-01 97.1% 74.7%
5017735 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.71 50.0 4.27e-01 76.8% 46.4%
4927036 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 54.0 5.09e-01 85.5% 68.2%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 56.0 5.33e-01 97.1% 75.0%
869287 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.69 60.0 6.00e-01 100.0% 94.4%
3966494 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 61.0 5.24e-01 100.0% 71.8%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 61.0 5.62e-01 100.0% 80.0%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 60.0 5.39e-01 97.1% 74.7%
3930882 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 60.0 5.41e-01 100.0% 76.8%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 5.26e-01 100.0% 73.7%
5017260 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 52.0 4.36e-01 94.2% 96.3%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 41.0 4.05e-01 98.6% 60.0%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 51.0 4.77e-01 98.6% 70.9%
5066115 4052.1.1.0 beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.63 54.0 5.21e-01 100.0% 85.0%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 5.08e-01 97.1% 83.7%
3970225 1.1.13.68 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 0.62 53.0 4.86e-01 94.2% 81.1%
5048423 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.52e-01 100.0% 91.3%
3516562 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.61 51.0 4.17e-01 97.1% 56.4%
1291989 1.1.5.42 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ-like 0.61 51.0 4.69e-01 100.0% 72.0%
3321067 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.31e-01 94.2% 66.7%
4083333 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 49.0 4.48e-01 97.1% 67.4%
4949049 3488.1.1.5 a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Cache_3-Cache_2 0.59 45.0 3.86e-01 84.1% 67.8%
3802051 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.48e-01 98.6% 71.6%
4008034 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.58 42.0 3.22e-01 78.3% 47.1%
4261492 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.58 42.0 3.39e-01 78.3% 73.3%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.41e-01 76.8% 67.7%
3342224 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.76e-01 97.1% 61.9%
4459946 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.57 41.0 2.90e-01 79.7% 31.8%
4295277 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 40.0 3.21e-01 78.3% 42.7%
4553723 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 45.0 4.18e-01 97.1% 68.4%
3965912 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 3.66e-01 78.3% 87.4%
3681076 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 40.0 3.37e-01 79.7% 86.9%
5065747 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.55 38.0 3.50e-01 72.5% 64.4%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.54 45.0 4.22e-01 89.9% 78.8%
3730935 2003.1.2.102 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.54 38.0 2.40e-01 76.8% 51.7%
3622052 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 49.0 4.54e-01 98.6% 84.7%
3478979 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 43.0 3.54e-01 89.9% 97.7%
3258963 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.38e-01 97.1% 85.0%
3630303 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.53 44.0 4.04e-01 95.7% 72.6%
3267250 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.26e-01 98.6% 100.0%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.14e-01 95.7% 85.3%
3407408 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 41.0 3.44e-01 88.4% 100.0%
5053147 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 42.0 2.59e-01 95.7% 41.4%
4014955 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 37.0 3.14e-01 79.7% 80.8%
4399650 223.1.1.59 a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.51 37.0 2.83e-01 78.3% 44.6%
3794026 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.51 35.0 3.34e-01 75.4% 58.8%