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IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071048

Arc-Vir

IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071048

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-117
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02899.24 best Phage_int_SAM_1 26.7 7.80e-06 76.3% 97.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yhlA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.70 63.0 4.42e-01 99.1% 45.0%
2aj4B03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 39.0 3.48e-01 73.7% 66.0%
7dl9A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 39.0 3.24e-01 75.4% 98.5%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 41.0 4.17e-01 100.0% 85.0%
1kpgD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.37e-01 98.2% 92.9%
1f1mA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.51 39.0 3.46e-01 99.1% 57.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4566550 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.88 74.0 7.93e-01 100.0% 100.0%
4142699 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.87 72.0 7.68e-01 97.4% 99.0%
3969537 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.86 73.0 7.77e-01 94.7% 100.0%
4377812 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.86 73.0 7.77e-01 94.7% 100.0%
4040148 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.86 73.0 7.75e-01 94.7% 100.0%
4655797 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.86 69.0 7.53e-01 92.1% 100.0%
4192110 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.85 73.0 7.63e-01 100.0% 97.1%
4520087 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.85 71.0 7.57e-01 95.6% 100.0%
4008705 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.85 75.0 7.54e-01 100.0% 92.2%
4667626 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 71.0 7.57e-01 97.4% 100.0%
4318189 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.70e-01 97.4% 99.0%
4979940 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.53e-01 100.0% 95.5%
5052501 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 70.0 7.47e-01 96.5% 100.0%
4220256 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 73.0 7.49e-01 100.0% 95.5%
4069480 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 73.0 7.49e-01 100.0% 95.5%
4996189 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 70.0 7.31e-01 98.2% 96.2%
4657272 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 70.0 7.29e-01 100.0% 96.2%
4090274 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 73.0 7.59e-01 97.4% 100.0%
3504160 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 72.0 7.38e-01 98.2% 94.5%
4168571 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 72.0 7.35e-01 98.2% 95.5%
4173849 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 70.0 7.17e-01 99.1% 92.7%
4487415 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 72.0 7.26e-01 100.0% 92.2%
4385779 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 77.0 7.57e-01 99.1% 94.2%
3958903 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.82 72.0 7.49e-01 93.0% 100.0%
4160987 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 70.0 7.13e-01 98.2% 93.6%
4220769 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 71.0 7.43e-01 98.2% 100.0%
4406523 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 70.0 7.10e-01 100.0% 95.5%
4133754 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 72.0 7.26e-01 100.0% 96.5%
4053119 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 72.0 7.11e-01 100.0% 93.3%
4962165 186.1.1.30 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › PF30198 0.78 73.0 7.09e-01 100.0% 93.6%
4233271 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.78 68.0 6.92e-01 100.0% 97.3%
5082760 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.74 64.0 6.41e-01 100.0% 90.4%
3423437 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 46.0 4.11e-01 80.7% 75.2%
3472979 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.59 35.0 3.69e-01 81.6% 63.8%
3750535 181.1.1.21 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PF30827 0.59 35.0 4.16e-01 95.6% 88.0%
4003960 109.4.1.263 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UVSSA_N 0.58 43.0 3.88e-01 77.2% 83.9%
3174254 109.4.1.58 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.52 45.0 3.59e-01 97.4% 67.9%
3537025 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 45.0 2.93e-01 99.1% 63.2%
D2 high residues 131-316
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 37.7 2.50e-09 100.0% 87.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 64.0 6.59e-01 94.1% 83.2%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.80 61.0 6.40e-01 100.0% 85.3%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 69.0 7.19e-01 98.9% 98.3%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 61.0 6.34e-01 92.5% 88.9%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.74 70.0 6.70e-01 98.4% 93.4%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.73 69.0 6.47e-01 100.0% 90.0%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 60.0 5.36e-01 94.6% 68.9%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 35.0 4.45e-01 91.4% 85.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4183457 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 65.0 7.35e-01 95.7% 97.2%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 68.0 7.17e-01 100.0% 88.8%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 72.0 7.34e-01 100.0% 89.4%
5076857 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 70.0 7.25e-01 100.0% 89.7%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 7.14e-01 100.0% 88.3%
4940211 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 72.0 7.53e-01 100.0% 96.5%
3969558 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 55.0 6.42e-01 75.8% 91.1%
4044870 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 55.0 6.44e-01 75.8% 91.9%
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 54.0 6.38e-01 75.8% 91.1%
4960057 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 55.0 6.32e-01 74.7% 90.0%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 52.0 6.32e-01 76.3% 95.2%
5027341 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 63.0 6.80e-01 95.2% 92.5%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 64.0 6.84e-01 100.0% 92.7%
4992939 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 62.0 6.47e-01 94.1% 85.9%
3964552 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 54.0 6.28e-01 75.8% 93.3%
4999495 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 65.0 6.60e-01 95.2% 86.1%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 73.0 7.09e-01 100.0% 88.0%
3979114 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 53.0 6.29e-01 95.7% 96.2%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 49.0 5.96e-01 75.3% 92.0%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 69.0 6.86e-01 100.0% 88.4%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 69.0 7.00e-01 100.0% 91.4%
4120466 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 53.0 6.18e-01 75.3% 92.6%
4007744 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 76.0 7.31e-01 100.0% 94.6%
4453818 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 59.0 6.55e-01 82.3% 94.7%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 54.0 6.20e-01 73.7% 92.1%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 69.0 7.14e-01 97.8% 98.3%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 55.0 6.50e-01 76.9% 99.3%
3958910 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 54.0 6.15e-01 75.3% 92.9%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 71.0 7.06e-01 100.0% 93.7%
3208241 101.1.8.10 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.77 73.0 6.27e-01 100.0% 83.2%
5034904 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 47.0 5.83e-01 71.0% 96.5%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 65.0 6.59e-01 100.0% 88.6%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 63.0 6.56e-01 100.0% 91.4%
4961786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 57.0 6.31e-01 76.9% 94.0%
5082761 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 53.0 6.22e-01 74.2% 99.2%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 69.0 6.71e-01 100.0% 87.5%
4007467 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 64.0 6.05e-01 94.6% 74.5%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 70.0 6.99e-01 97.8% 95.8%
4112553 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 53.0 5.92e-01 75.3% 91.0%
4931987 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 43.0 5.57e-01 74.7% 98.2%
4964815 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 55.0 6.09e-01 76.3% 96.0%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 53.0 5.88e-01 76.3% 92.0%
3945675 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 51.0 5.81e-01 78.0% 94.3%
4962932 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 52.0 5.58e-01 75.3% 97.0%
3964657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 62.0 6.13e-01 100.0% 88.7%
3887879 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.67 49.0 5.09e-01 75.3% 97.1%
5044666 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.65 48.0 5.15e-01 75.8% 89.4%
3920162 4967.1.1.24 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › ALKBH8_N 0.57 29.0 3.42e-01 98.9% 67.2%