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IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071052

Arc-Vir

IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071052

Quality

88.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-42_61-88_132-227
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27782.1 best Csf3 38.6 1.20e-09 71.4% 37.7%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 36.0 5.14e-01 72.0% 98.7%
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 32.0 4.63e-01 72.7% 100.0%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 39.0 4.96e-01 72.0% 100.0%
3to8A02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 37.0 4.59e-01 72.7% 88.5%
3qjlA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 46.0 5.21e-01 71.4% 98.3%
1apsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 38.0 4.64e-01 78.9% 92.9%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 34.0 4.47e-01 71.4% 93.2%
5t9pA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 36.0 4.55e-01 77.6% 100.0%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.62 36.0 4.43e-01 85.7% 91.8%
1j27A00 3.30.70.1120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like 0.60 36.0 4.43e-01 70.8% 95.9%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 4.42e-01 71.4% 100.0%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 4.33e-01 70.8% 97.8%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 36.0 4.44e-01 75.2% 100.0%
3qfwA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.59 35.0 4.31e-01 70.2% 93.1%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.59 36.0 3.89e-01 82.0% 71.6%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 4.26e-01 75.2% 95.8%
7nitA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 36.0 3.59e-01 70.8% 57.6%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 4.25e-01 71.4% 94.9%
2pgcA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 35.0 4.16e-01 70.8% 89.6%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 36.0 4.39e-01 71.4% 99.0%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.58e-01 70.2% 100.0%
3hdiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 40.0 3.72e-01 70.8% 85.4%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.57 33.0 3.57e-01 70.2% 67.4%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 31.0 3.64e-01 70.2% 74.3%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 33.0 4.10e-01 85.1% 93.9%
5llwA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 36.0 3.86e-01 72.0% 73.7%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 35.0 4.30e-01 70.8% 99.0%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 4.32e-01 70.8% 99.0%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 34.0 4.18e-01 73.9% 100.0%
3u02A02 3.90.600.20 Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › 0.56 33.0 4.17e-01 72.0% 98.9%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 35.0 4.24e-01 73.9% 100.0%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 34.0 4.06e-01 70.8% 94.1%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 34.0 4.19e-01 70.8% 100.0%
1bwvA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.56 38.0 4.17e-01 70.2% 86.7%
1ykwA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.56 38.0 4.15e-01 70.8% 84.7%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 35.0 4.24e-01 75.8% 98.1%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 34.0 4.21e-01 70.8% 98.0%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 35.0 4.23e-01 75.2% 100.0%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 34.0 4.16e-01 90.7% 97.0%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 42.0 4.25e-01 83.2% 78.7%
3qpiA00 3.30.70.3420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.40e-01 71.4% 58.4%
3nwrA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.54 37.0 4.27e-01 70.2% 94.9%
1x9mA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.68e-01 71.4% 68.0%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 34.0 4.17e-01 70.2% 100.0%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 4.03e-01 70.8% 99.0%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 4.13e-01 70.2% 97.4%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 34.0 3.96e-01 74.5% 92.2%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 4.06e-01 70.8% 96.4%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.90e-01 70.8% 99.0%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.51 33.0 3.67e-01 70.8% 84.3%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 32.0 3.81e-01 71.4% 91.9%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.91e-01 70.2% 98.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954749 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.74 54.0 4.94e-01 74.5% 100.0%
4889148 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.74 53.0 4.83e-01 73.3% 100.0%
5036651 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.73 54.0 4.90e-01 74.5% 100.0%
5052836 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.71 43.0 5.26e-01 71.4% 95.0%
2426536 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.69 42.0 4.75e-01 74.5% 80.2%
4989897 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.68 48.0 4.43e-01 72.0% 99.5%
3990697 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.68 40.0 5.04e-01 70.2% 97.9%
3219903 304.9.1.81 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A 0.68 40.0 5.02e-01 70.2% 97.9%
3477938 304.9.1.36 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_10 0.66 41.0 4.94e-01 99.4% 94.3%
3941222 304.9.1.6 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.66 40.0 4.88e-01 74.5% 95.0%
3177677 304.9.1.6 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.64 42.0 4.99e-01 72.0% 96.4%
3286580 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.63 37.0 4.60e-01 70.2% 93.0%
3503234 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.63 46.0 5.16e-01 73.9% 98.4%
4970430 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.63 43.0 5.04e-01 90.1% 100.0%
3703763 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 38.0 4.29e-01 71.4% 78.3%
4989935 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.62 43.0 4.95e-01 70.8% 98.3%
3222628 304.9.1.80 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF27577 0.61 40.0 4.09e-01 77.0% 67.7%
4990743 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.60 37.0 4.39e-01 70.2% 92.4%
3972158 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.60 35.0 4.42e-01 70.8% 97.9%
5164 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.59 34.0 4.33e-01 70.8% 97.8%
3287505 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.59 39.0 4.56e-01 84.5% 97.3%
1933420 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 35.0 4.24e-01 70.8% 91.2%
3281048 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.59 36.0 4.44e-01 70.8% 100.0%
5174 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 34.0 4.25e-01 71.4% 94.9%
3733897 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 35.0 4.16e-01 70.8% 88.9%
3593033 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 39.0 4.15e-01 70.8% 77.9%
3924341 304.9.1.93 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, PF27577 0.58 38.0 3.83e-01 77.0% 64.2%
4199730 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 27.0 3.22e-01 74.5% 63.8%
3973541 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 34.0 4.27e-01 72.0% 100.0%
3739994 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.57 37.0 4.50e-01 70.8% 100.0%
169847 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.57 34.0 4.25e-01 70.2% 100.0%
4025874 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 35.0 4.28e-01 70.8% 95.2%
170105 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.57 35.0 4.32e-01 70.8% 100.0%
4975078 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 35.0 4.21e-01 74.5% 95.2%
1168089 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 37.0 4.17e-01 88.8% 87.0%
3724729 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 39.0 4.23e-01 73.9% 86.2%
4495104 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 37.0 3.95e-01 72.0% 74.5%
3260229 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 34.0 4.13e-01 70.8% 97.0%
5175 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 35.0 4.28e-01 70.8% 99.0%
3968887 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 34.0 4.08e-01 70.8% 96.0%
4267776 304.4.1.56 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › PrmA 0.55 37.0 4.30e-01 74.5% 94.8%
3590341 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.55 39.0 3.71e-01 71.4% 92.0%
3965806 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 33.0 4.09e-01 70.2% 100.0%
3605572 304.132.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in 2,3-bisphosphoglycerate-independent phosphoglycerate mutase › ferredoxin-like domain in 2,3-bisphosphoglycerate-independent phosphoglycerate mutase › PhosphMutase 0.55 38.0 3.79e-01 70.2% 97.0%
3596130 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 38.0 4.09e-01 71.4% 99.3%
3185863 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.53 40.0 4.29e-01 85.1% 92.6%
3727497 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.52 38.0 4.29e-01 75.2% 99.2%
3732624 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.52 36.0 4.06e-01 70.8% 92.8%
3805333 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.52 39.0 3.63e-01 77.6% 63.0%
4929092 304.4.1.9 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.52 32.0 3.53e-01 70.2% 77.4%
3652146 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.52 38.0 3.68e-01 77.6% 65.8%
4299557 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.33e-01 70.8% 57.9%
5035147 304.4.1.18 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HapK 0.51 34.0 4.07e-01 70.2% 100.0%
3869277 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.51 37.0 3.61e-01 76.4% 68.1%