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IMGVR_UViG_3300017818_002064-3300017818-Ga0181565_100274483
Arc-VirIMGVR_UViG_3300017818_002064-3300017818-Ga0181565_100274483
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-60
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.76 | 56.0 | 4.68e-01 | 79.3% | 62.0% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.70 | 55.0 | 4.72e-01 | 86.2% | 91.4% |
| 1qfjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.69 | 54.0 | 4.67e-01 | 86.2% | 83.5% |
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.66 | 49.0 | 4.61e-01 | 81.0% | 94.4% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 47.0 | 3.66e-01 | 77.6% | 61.4% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 44.0 | 4.29e-01 | 75.9% | 64.1% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 46.0 | 4.29e-01 | 77.6% | 60.3% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 46.0 | 4.69e-01 | 75.9% | 78.6% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 4.23e-01 | 75.9% | 78.6% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 3.36e-01 | 75.9% | 53.2% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 46.0 | 4.44e-01 | 81.0% | 94.1% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.61 | 44.0 | 3.42e-01 | 79.3% | 33.8% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 46.0 | 3.55e-01 | 84.5% | 69.7% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 44.0 | 3.54e-01 | 82.8% | 68.0% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.57 | 43.0 | 3.28e-01 | 82.8% | 47.6% |
| 1owbA01 | 2.20.28.60 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 38.0 | 4.09e-01 | 75.9% | 83.7% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.94e-01 | 74.1% | 69.8% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 3.92e-01 | 74.1% | 70.0% |
| 3f6zB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.56 | 45.0 | 4.13e-01 | 91.4% | 89.9% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.55 | 40.0 | 3.31e-01 | 79.3% | 44.3% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.92e-01 | 81.0% | 77.4% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 41.0 | 3.15e-01 | 86.2% | 71.2% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.55 | 39.0 | 3.08e-01 | 77.6% | 95.4% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.54 | 38.0 | 3.77e-01 | 75.9% | 95.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033424 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.77 | 50.0 | 4.96e-01 | 70.7% | 63.3% |
| 5033600 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 53.0 | 5.66e-01 | 75.9% | 87.8% |
| 5064515 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.73 | 48.0 | 4.75e-01 | 70.7% | 65.0% |
| 3709439 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.68 | 57.0 | 5.15e-01 | 94.8% | 92.5% |
| 3282239 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.67 | 53.0 | 4.02e-01 | 86.2% | 78.5% |
| 3832176 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.67 | 48.0 | 4.62e-01 | 79.3% | 65.7% |
| 4217174 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 54.0 | 5.10e-01 | 91.4% | 87.1% |
| 3996278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 43.0 | 3.38e-01 | 74.1% | 33.3% |
| 1408049 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.63 | 46.0 | 3.48e-01 | 75.9% | 32.4% |
| 3907619 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 44.0 | 3.93e-01 | 75.9% | 52.9% |
| 5081809 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 51.0 | 4.94e-01 | 89.7% | 92.3% |
| 3968161 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.62 | 47.0 | 4.46e-01 | 82.8% | 97.1% |
| 4358637 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.62 | 43.0 | 4.12e-01 | 74.1% | 64.3% |
| 137832 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.61 | 46.0 | 4.44e-01 | 81.0% | 94.1% |
| 3251414 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 3.89e-01 | 84.5% | 48.2% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.61 | 46.0 | 4.16e-01 | 81.0% | 60.0% |
| 4049664 | 4212.1.1.1 ↗ | beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N | 0.61 | 44.0 | 3.83e-01 | 79.3% | 89.5% |
| 3218198 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 45.0 | 4.63e-01 | 82.8% | 83.6% |
| 3699652 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.10e-01 | 74.1% | 69.2% |
| 3607438 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.59 | 46.0 | 3.30e-01 | 86.2% | 67.2% |
| 4147056 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 43.0 | 3.61e-01 | 75.9% | 45.0% |
| 3879653 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.59 | 42.0 | 3.95e-01 | 74.1% | 62.9% |
| 3222051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.20e-01 | 77.6% | 72.3% |
| 3278650 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.59 | 44.0 | 3.47e-01 | 84.5% | 67.9% |
| 3536595 | 2004.1.1.413 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 | 0.58 | 42.0 | 3.27e-01 | 75.9% | 77.7% |
| 3941391 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 41.0 | 4.08e-01 | 74.1% | 76.7% |
| 3737903 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.57 | 40.0 | 4.15e-01 | 75.9% | 80.0% |
| 4942673 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.57 | 44.0 | 3.60e-01 | 84.5% | 48.2% |
| 1715838 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.55 | 41.0 | 3.20e-01 | 86.2% | 73.5% |
| 3508415 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.55 | 44.0 | 3.47e-01 | 87.9% | 73.8% |
| 1715836 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 41.0 | 3.15e-01 | 86.2% | 71.2% |
| 3856133 | 211.1.1.17 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C | 0.55 | 37.0 | 3.26e-01 | 74.1% | 44.0% |
| 3999926 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 36.0 | 3.70e-01 | 70.7% | 81.8% |
| 5074749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.49e-01 | 74.1% | 64.3% |
| 5038348 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 34.0 | 2.61e-01 | 79.3% | 27.9% |
| 1002433 | 11.10.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Toxin_ToxA | 0.51 | 38.0 | 3.22e-01 | 82.8% | 89.3% |
D2
high
residues 88-159
Domain cluster:
rep: PH2015_20_scaffold_1_prodigal-single.1__X__X__00020__D217-300
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6q61A00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.61 | 26.0 | 2.90e-01 | 86.1% | 44.1% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.60 | 27.0 | 2.99e-01 | 87.5% | 45.6% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.56 | 26.0 | 2.91e-01 | 87.5% | 48.1% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 37.0 | 3.00e-01 | 84.7% | 35.5% |
| 4lyaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 2.90e-01 | 86.1% | 81.6% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 35.0 | 3.85e-01 | 95.8% | 81.4% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.52 | 38.0 | 3.15e-01 | 79.2% | 83.7% |
| 1mk1A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 42.0 | 3.22e-01 | 95.8% | 43.9% |
| 2yb1A01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 39.0 | 2.89e-01 | 86.1% | 78.7% |
| 4c89C00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.67e-01 | 91.7% | 72.0% |
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 42.0 | 3.23e-01 | 100.0% | 55.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3930365 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.56 | 47.0 | 4.16e-01 | 100.0% | 63.8% |
| 3263226 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 26.0 | 3.48e-01 | 84.7% | 93.9% |
| 4021525 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.54 | 39.0 | 2.59e-01 | 79.2% | 62.8% |
| 3675509 | 192.3.1.0 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain | 0.52 | 39.0 | 3.22e-01 | 83.3% | 54.5% |
| 4020677 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 43.0 | 3.62e-01 | 95.8% | 91.9% |
| 3938507 | 7579.1.1.23 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II | 0.51 | 43.0 | 2.73e-01 | 95.8% | 47.7% |
| 3786028 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.51 | 43.0 | 3.54e-01 | 98.6% | 84.8% |
| 4978692 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.51 | 40.0 | 2.69e-01 | 87.5% | 94.8% |
| 4976411 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 38.0 | 2.32e-01 | 81.9% | 28.0% |