←Back to structures

IMGVR_UViG_3300017831_000054-3300017831-Ga0189856_100297318

Arc-Vir

IMGVR_UViG_3300017831_000054-3300017831-Ga0189856_100297318

Identity

Kingdom:
archaea

Quality

78.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-47
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.86 60.0 4.78e-01 73.9% 39.3%
3qoqC00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.83 66.0 6.46e-01 87.0% 79.6%
1p94A00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.81 64.0 5.46e-01 89.1% 53.9%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.77 68.0 5.35e-01 100.0% 49.0%
1b01A00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.76 60.0 6.17e-01 87.0% 93.0%
3rd8A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.68 47.0 4.45e-01 91.3% 59.3%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 52.0 4.52e-01 91.3% 78.4%
7y7oA01 3.40.390.30 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" 0.64 55.0 3.97e-01 100.0% 67.1%
4h15A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 46.0 2.90e-01 73.9% 13.4%
1t3uA01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.61 40.0 4.17e-01 95.7% 74.4%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 42.0 2.54e-01 78.3% 10.1%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 50.0 3.94e-01 100.0% 43.4%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.58 46.0 2.99e-01 91.3% 46.1%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.62e-01 100.0% 84.5%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 44.0 3.55e-01 84.8% 63.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 41.0 2.79e-01 73.9% 43.7%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.57 41.0 3.67e-01 84.8% 84.6%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 41.0 4.13e-01 91.3% 81.2%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.55 39.0 2.91e-01 78.3% 79.3%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.55 43.0 3.62e-01 93.5% 77.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 39.0 3.13e-01 76.1% 90.4%
1ou0A00 3.40.50.10230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase 0.54 44.0 3.08e-01 100.0% 66.3%
1sazA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 2.73e-01 84.8% 65.0%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.53 41.0 2.83e-01 95.7% 56.0%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.52 44.0 3.21e-01 95.7% 78.9%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 35.0 2.47e-01 80.4% 35.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045263 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.93 69.0 5.60e-01 78.3% 45.0%
3955846 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.91 66.0 5.77e-01 76.1% 55.4%
3951746 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.91 74.0 6.19e-01 87.0% 54.8%
4058428 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 63.0 5.96e-01 76.1% 63.6%
2455631 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.88 71.0 5.73e-01 87.0% 48.2%
3279727 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 65.0 6.34e-01 78.3% 72.0%
3981833 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.87 72.0 5.58e-01 89.1% 43.6%
5033202 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.87 69.0 5.38e-01 84.8% 44.4%
4980496 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 67.0 4.53e-01 100.0% 25.3%
4980865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 66.0 5.42e-01 82.6% 48.8%
4632125 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.86 63.0 5.43e-01 78.3% 52.9%
3504504 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.85 62.0 6.89e-01 76.1% 100.0%
4649369 101.1.11.14 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD 0.85 68.0 5.94e-01 84.8% 60.0%
3463111 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.85 60.0 5.39e-01 73.9% 88.3%
5050174 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.84 60.0 4.87e-01 76.1% 41.2%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.84 59.0 4.45e-01 73.9% 33.3%
4984124 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.84 61.0 5.41e-01 80.4% 55.4%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 59.0 4.92e-01 76.1% 43.8%
4970117 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 59.0 4.73e-01 78.3% 40.0%
162036 101.1.11.28 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › NikA-like 0.81 62.0 5.98e-01 82.6% 76.5%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 58.0 4.91e-01 76.1% 46.7%
3979215 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 54.0 5.15e-01 71.7% 60.0%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.78 57.0 4.76e-01 78.3% 45.0%
1167933 101.1.11.5 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Arc 0.77 68.0 6.25e-01 100.0% 78.3%
4993165 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.77 56.0 4.41e-01 78.3% 38.9%
3318879 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 50.0 4.51e-01 73.9% 49.2%
5050855 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.76 57.0 5.46e-01 84.8% 72.7%
5029686 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.75 53.0 4.59e-01 76.1% 46.7%
5074942 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 54.0 4.67e-01 78.3% 49.3%
3973493 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.75 53.0 4.78e-01 76.1% 53.8%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.74 57.0 5.40e-01 100.0% 70.9%
3475426 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.73 56.0 4.90e-01 84.8% 98.6%
5012232 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 57.0 5.44e-01 89.1% 74.5%
3005818 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.72 55.0 5.03e-01 84.8% 85.5%
2625223 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.71 56.0 5.30e-01 87.0% 74.5%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 53.0 5.03e-01 97.8% 69.1%
4955174 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.69 56.0 4.06e-01 95.7% 93.6%
4023138 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.68 47.0 2.97e-01 76.1% 13.1%
4966307 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.65 52.0 3.95e-01 95.7% 96.0%
3507722 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.62 51.0 4.11e-01 93.5% 69.5%
3964437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.61 51.0 4.00e-01 100.0% 86.4%
4160448 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.61 47.0 2.76e-01 91.3% 22.5%
4967672 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.61 48.0 3.57e-01 95.7% 82.9%
4990568 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.60 51.0 3.32e-01 100.0% 29.4%
3929844 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 41.0 3.72e-01 76.1% 53.1%
4561787 6146.2.1.1 ↗ a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C 0.57 47.0 3.88e-01 100.0% 74.7%
4428937 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 47.0 3.59e-01 100.0% 40.0%
4988165 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 42.0 3.03e-01 97.8% 44.0%