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IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652623
Arc-VirIMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652623
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-117
Domain cluster:
rep: peptidyl-tRNA_hydrolase__YP_009447948__Flamingopox_virus_FGPVKD09__2059380__D17-122
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01981.22 best | PTH2 | 113.6 | 8.00e-33 | 100.0% | 93.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q7sA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.94 | 91.0 | 8.84e-01 | 100.0% | 93.2% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 38.0 | 4.06e-01 | 100.0% | 65.3% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 37.0 | 3.93e-01 | 100.0% | 62.6% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 37.0 | 4.02e-01 | 100.0% | 67.4% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 35.0 | 3.63e-01 | 100.0% | 57.7% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.62 | 37.0 | 3.94e-01 | 100.0% | 67.7% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 38.0 | 4.21e-01 | 100.0% | 81.2% |
| 1dt4A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 36.0 | 4.23e-01 | 100.0% | 89.0% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 37.0 | 4.16e-01 | 100.0% | 85.0% |
| 3ekiA01 | 3.40.190.180 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I | 0.57 | 44.0 | 3.79e-01 | 83.5% | 84.7% |
| 3jwhA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 43.0 | 3.57e-01 | 80.7% | 98.4% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 35.0 | 3.83e-01 | 100.0% | 78.4% |
| 3bf4A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.84e-01 | 100.0% | 75.8% |
| 3onmA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 39.0 | 4.11e-01 | 90.8% | 86.5% |
| 1ixcA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 38.0 | 3.95e-01 | 90.8% | 85.0% |
| 4dddA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 40.0 | 3.60e-01 | 86.2% | 82.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946237 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.99 | 97.0 | 9.49e-01 | 100.0% | 94.8% |
| 4947020 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.99 | 97.0 | 9.46e-01 | 100.0% | 94.8% |
| 3741182 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.98 | 96.0 | 8.58e-01 | 100.0% | 77.9% |
| 5030351 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.98 | 95.0 | 9.27e-01 | 100.0% | 93.9% |
| 4559979 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.98 | 95.0 | 9.11e-01 | 100.0% | 92.5% |
| 3599010 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.97 | 94.0 | 8.68e-01 | 99.1% | 96.9% |
| 3990988 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.97 | 95.0 | 8.95e-01 | 100.0% | 96.0% |
| 4025295 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.95 | 92.0 | 8.60e-01 | 100.0% | 93.8% |
| 3702490 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.92 | 88.0 | 8.07e-01 | 100.0% | 87.5% |
| 3595444 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.91 | 87.0 | 7.96e-01 | 100.0% | 88.9% |
| 3280180 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.89 | 65.0 | 7.30e-01 | 86.2% | 96.5% |
| 3277850 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.89 | 72.0 | 7.73e-01 | 90.8% | 96.8% |
| 3354413 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.87 | 82.0 | 7.94e-01 | 100.0% | 90.8% |
| 3628884 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.86 | 80.0 | 7.92e-01 | 100.0% | 93.8% |
| 3586210 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.84 | 62.0 | 6.94e-01 | 87.2% | 97.6% |
| 5000388 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.70 | 42.0 | 4.58e-01 | 100.0% | 72.2% |
| 5022418 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.68 | 37.0 | 4.67e-01 | 100.0% | 89.2% |
| 4928686 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 42.0 | 4.56e-01 | 100.0% | 76.7% |
| 4975988 | 304.134.1.1 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N | 0.63 | 38.0 | 4.42e-01 | 100.0% | 86.7% |
| 1205842 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.63 | 34.0 | 3.97e-01 | 100.0% | 75.0% |
| 3990150 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.62 | 38.0 | 4.37e-01 | 77.1% | 86.7% |
| 3250928 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 36.0 | 4.10e-01 | 100.0% | 81.2% |
| 3813426 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 35.0 | 3.86e-01 | 100.0% | 71.1% |
| 3783532 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.59 | 37.0 | 4.16e-01 | 100.0% | 83.7% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.59 | 32.0 | 3.95e-01 | 100.0% | 84.3% |
| 4950064 | 327.16.1.22 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27275 | 0.58 | 32.0 | 3.93e-01 | 100.0% | 84.3% |
| 3962447 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 37.0 | 3.72e-01 | 100.0% | 62.7% |
| 3700892 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.58 | 35.0 | 3.96e-01 | 100.0% | 81.2% |
| 4934181 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 35.0 | 4.06e-01 | 77.1% | 83.7% |
| 3397398 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.57 | 35.0 | 4.00e-01 | 100.0% | 83.7% |
| 5045726 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.56 | 35.0 | 3.94e-01 | 100.0% | 83.7% |
| 3892186 | 327.11.2.23 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_8 | 0.55 | 37.0 | 3.89e-01 | 75.2% | 75.0% |
| 3741660 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.55 | 39.0 | 2.92e-01 | 73.4% | 52.8% |
| 4202370 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.55 | 39.0 | 4.02e-01 | 89.9% | 80.0% |
| 3290078 | 321.4.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Methyltransferase type 12 N-terminal domain › Methyltransferase type 12 N-terminal domain | 0.52 | 42.0 | 2.80e-01 | 88.1% | 40.0% |
| 5049218 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.52 | 37.0 | 3.84e-01 | 100.0% | 80.0% |
| 4524622 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.52 | 39.0 | 4.05e-01 | 89.9% | 86.0% |
| 3429092 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 41.0 | 3.27e-01 | 88.1% | 95.9% |
| 4372705 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.52 | 37.0 | 4.00e-01 | 100.0% | 90.0% |
| 3881281 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.52 | 29.0 | 3.37e-01 | 90.8% | 78.7% |
| 3656834 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 31.0 | 3.59e-01 | 89.9% | 91.4% |
| 4240590 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.51 | 36.0 | 3.88e-01 | 100.0% | 88.9% |