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IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652626

Arc-Vir

IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652626

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 620-701
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wk1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 47.0 3.33e-01 84.1% 24.0%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.67 46.0 4.73e-01 84.1% 74.7%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.66 48.0 4.83e-01 85.4% 75.6%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.66 46.0 4.71e-01 84.1% 76.6%
6g80B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 52.0 3.73e-01 95.1% 31.2%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.65 38.0 3.93e-01 75.6% 61.0%
4dcmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 47.0 3.70e-01 89.0% 36.2%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.64 51.0 4.44e-01 97.6% 56.5%
1ejcA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.63 45.0 3.38e-01 100.0% 29.3%
3tosA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 44.0 3.11e-01 84.1% 23.9%
1jo0A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.62 42.0 4.02e-01 84.1% 58.8%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.44e-01 85.4% 80.6%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.14e-01 86.6% 60.6%
5iceA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 48.0 3.39e-01 85.4% 35.5%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 35.0 3.39e-01 74.4% 50.0%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.82e-01 92.7% 81.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.20e-01 86.6% 67.0%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.26e-01 86.6% 71.3%
6i6lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 46.0 3.31e-01 84.1% 35.6%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.16e-01 93.9% 57.5%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.46e-01 93.9% 74.0%
1rq8A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.59 40.0 3.86e-01 85.4% 60.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.33e-01 92.7% 72.0%
3hnrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 47.0 3.58e-01 86.6% 47.2%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.59 42.0 4.06e-01 85.4% 66.7%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.58 46.0 4.33e-01 86.6% 74.3%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 43.0 3.38e-01 93.9% 36.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.17e-01 90.2% 68.3%
2hgcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.48e-01 92.7% 87.2%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.29e-01 92.7% 72.0%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.54e-01 84.1% 50.9%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 34.0 3.45e-01 81.7% 57.6%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.70e-01 84.1% 58.9%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.21e-01 92.7% 67.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.29e-01 92.7% 72.4%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.56 43.0 4.10e-01 86.6% 71.3%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.56 43.0 3.81e-01 84.1% 61.8%
3vgpA00 3.40.50.12610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 43.0 3.51e-01 85.4% 60.1%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 48.0 4.54e-01 98.8% 90.0%
3c9aA03 2.20.20.160 Mainly Beta › Single Sheet › Anthopleurin-A › 0.55 41.0 4.36e-01 78.0% 94.4%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.54 38.0 3.68e-01 73.2% 97.9%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.54 47.0 3.53e-01 98.8% 98.1%
3dr5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.20e-01 87.8% 33.8%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.00e-01 84.1% 77.6%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.00e-01 86.6% 87.6%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.96e-01 92.7% 70.2%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.23e-01 91.5% 86.5%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.71e-01 81.7% 70.6%
2yvwA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.53 46.0 3.50e-01 100.0% 76.7%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.52 41.0 3.60e-01 85.4% 56.5%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.52 41.0 4.12e-01 90.2% 87.7%
2d9iA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 39.0 3.81e-01 85.4% 71.9%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.51 41.0 2.88e-01 87.8% 97.5%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 42.0 3.23e-01 90.2% 62.0%
4fqdB02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.51 44.0 3.31e-01 100.0% 75.9%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.98e-01 92.7% 87.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489258 306.8.1.0 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like 0.77 55.0 5.06e-01 74.4% 98.1%
5026253 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.68 48.0 4.85e-01 85.4% 75.0%
4948041 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.67 50.0 5.05e-01 85.4% 80.0%
5059020 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.66 47.0 4.80e-01 84.1% 76.2%
4992707 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 3.96e-01 85.4% 44.3%
3609147 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 49.0 4.56e-01 93.9% 62.9%
None 0.65 50.0 3.69e-01 100.0% 30.9%
4640904 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.65 46.0 4.56e-01 84.1% 70.6%
3292011 2003.1.5.154 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 0.65 56.0 3.42e-01 97.6% 15.9%
4926945 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.58e-01 91.5% 63.8%
3448558 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.65 48.0 2.94e-01 78.0% 31.7%
4090109 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.65 47.0 3.53e-01 100.0% 29.8%
5056162 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.65 46.0 4.72e-01 85.4% 77.5%
4967063 2003.1.5.80 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_24 0.64 44.0 3.19e-01 86.6% 25.1%
4395739 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.63 44.0 4.18e-01 84.1% 60.0%
2491334 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.99e-01 86.6% 82.4%
4957231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.75e-01 92.7% 73.7%
3649264 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.63 52.0 3.18e-01 89.0% 18.3%
3597641 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.62 37.0 3.83e-01 73.2% 64.0%
4966320 101.1.2.884 alpha arrays › HTH › HTH › winged helix domain › UPF0122 0.62 48.0 4.52e-01 91.5% 68.0%
4663585 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.62 47.0 3.49e-01 100.0% 30.9%
4565948 304.37.1.0 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 0.62 38.0 3.75e-01 75.6% 56.7%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.61 54.0 4.70e-01 100.0% 65.1%
5008379 304.37.1.1 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.61 36.0 3.87e-01 74.4% 67.1%
3598887 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 36.0 3.77e-01 72.0% 64.0%
3983904 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 44.0 4.08e-01 86.6% 60.0%
3944893 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.29e-01 87.8% 68.4%
4928979 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 53.0 4.88e-01 100.0% 91.7%
3528332 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.60 35.0 3.70e-01 73.2% 62.7%
3432388 109.4.1.43 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP 0.60 50.0 4.17e-01 93.9% 63.3%
5031317 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.21e-01 91.5% 59.2%
5040361 101.1.2.673 alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.60 42.0 3.92e-01 85.4% 58.1%
5040012 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 47.0 4.58e-01 91.5% 78.9%
5025218 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.02e-01 85.4% 40.0%
3704940 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.59 49.0 4.41e-01 97.6% 64.2%
4147372 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.59 35.0 3.21e-01 89.0% 43.6%
3629469 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.59 34.0 3.43e-01 73.2% 54.1%
3711218 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.59 52.0 3.58e-01 100.0% 29.1%
3390426 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.59 36.0 3.43e-01 73.2% 51.0%
3993298 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.58 36.0 3.66e-01 73.2% 62.5%
5018900 101.1.2.673 alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.58 41.0 3.84e-01 85.4% 58.1%
3404332 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.57 37.0 3.60e-01 85.4% 58.9%
2834167 304.37.1.1 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.57 36.0 3.66e-01 73.2% 63.4%
3928208 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 34.0 3.51e-01 75.6% 61.3%
5048525 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.35e-01 85.4% 82.4%
4214782 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.56 47.0 3.64e-01 92.7% 97.9%
3907766 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.27e-01 93.9% 71.8%
3949754 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 49.0 3.61e-01 100.0% 44.8%
3268538 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.56 41.0 3.71e-01 87.8% 56.5%
4363314 101.1.2.485 alpha arrays › HTH › HTH › winged helix domain › DUF2513 0.55 49.0 4.42e-01 100.0% 86.1%
5064092 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 42.0 3.90e-01 92.7% 63.6%
3624653 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.54 33.0 3.41e-01 75.6% 62.7%
3961181 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.54 48.0 3.56e-01 100.0% 95.9%
5082051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.32e-01 91.5% 83.3%
3481408 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.21e-01 84.1% 39.0%
3925904 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.54 41.0 3.31e-01 85.4% 42.3%
3285086 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.53 41.0 4.24e-01 81.7% 97.3%
5053743 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.53 46.0 3.44e-01 100.0% 40.9%
3743466 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.53 40.0 3.72e-01 89.0% 63.8%
4891104 227.1.1.5 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_UL42 0.53 43.0 3.76e-01 100.0% 57.3%
5035456 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.50 33.0 3.42e-01 75.6% 70.0%
D2 medium residues 38-84_289-361
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 24.0 3.29e-01 82.5% 80.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 26.0 3.46e-01 78.3% 91.4%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 26.0 2.91e-01 76.7% 59.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4117297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 28.0 3.58e-01 70.8% 71.4%
4119875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 28.0 3.65e-01 75.0% 84.6%
4456732 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 29.0 3.39e-01 76.7% 68.8%
4625348 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.54 26.0 3.50e-01 78.3% 90.0%
4056113 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.53 29.0 3.21e-01 91.7% 63.0%
4349950 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 26.0 3.44e-01 74.2% 91.7%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 23.0 3.05e-01 87.5% 76.9%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.51 26.0 3.40e-01 85.0% 90.8%
5077400 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 30.0 3.21e-01 85.8% 67.3%
D3 medium residues 85-163
PDB
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.39e-01 81.0% 67.2%
5c3pD00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.52 46.0 3.10e-01 100.0% 56.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4486484 2004.1.1.799 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_27, AAA_29 0.56 48.0 3.29e-01 100.0% 79.4%
5026249 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 48.0 3.38e-01 100.0% 76.5%
4959079 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 47.0 2.89e-01 100.0% 88.3%
2323715 1192.1.1.0 0.54 38.0 3.36e-01 74.7% 63.3%
3583571 833.1.1.0 a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 0.54 46.0 4.15e-01 93.7% 93.4%
3903430 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.53 33.0 3.28e-01 100.0% 56.5%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.53 32.0 3.20e-01 98.7% 56.2%
3408734 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 43.0 2.98e-01 97.5% 74.3%
3788749 6109.1.1.0 a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 0.51 43.0 3.56e-01 96.2% 72.0%
D4 medium residues 164-288
PDB
Domain cluster: representative
D5 medium residues 362-481
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.65 48.0 5.32e-01 86.7% 100.0%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 47.0 4.41e-01 79.2% 94.6%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 32.0 3.84e-01 80.8% 88.0%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 48.0 3.30e-01 96.7% 89.8%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 3.18e-01 85.8% 90.4%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 3.20e-01 89.2% 81.9%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 3.28e-01 89.2% 80.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 39.0 4.17e-01 100.0% 91.4%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.89e-01 90.8% 69.2%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 3.24e-01 90.8% 95.4%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 3.07e-01 89.2% 74.3%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 3.28e-01 92.5% 81.0%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.51 31.0 3.76e-01 81.7% 94.7%
8siuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 3.09e-01 93.3% 66.1%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 3.04e-01 88.3% 69.2%
7d27A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 38.0 3.14e-01 80.0% 92.2%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 38.0 3.15e-01 80.8% 85.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257727 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.67 54.0 5.26e-01 95.0% 78.5%
383967 216.1.1.7 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d1 0.64 46.0 5.23e-01 83.3% 100.0%
3378755 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 48.0 4.76e-01 80.8% 95.2%
3712602 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 51.0 4.91e-01 87.5% 77.8%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 41.0 4.54e-01 91.7% 98.9%
3288281 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.56 35.0 3.38e-01 73.3% 53.5%
3174260 5.1.3.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.56 47.0 3.26e-01 92.5% 93.6%
3799341 3297.1.1.25 extended segments › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › WD40_RFWD3 0.55 44.0 3.18e-01 87.5% 72.1%
4081842 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.55 39.0 3.23e-01 80.8% 41.4%
3441395 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.54 43.0 3.18e-01 85.0% 69.0%
3706670 292.2.1.6 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.54 32.0 3.39e-01 80.8% 64.5%
3490808 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.53 45.0 3.18e-01 93.3% 76.4%
3816594 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 40.0 3.22e-01 79.2% 97.5%
3255634 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 46.0 3.24e-01 97.5% 89.8%
3713007 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.53 44.0 3.08e-01 91.7% 63.2%
3595178 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 42.0 2.62e-01 85.0% 37.2%
3784858 5.1.4.362 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_VPS8 0.53 41.0 2.79e-01 83.3% 62.8%
4952972 7520.1.1.2 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › HcgF 0.53 40.0 3.53e-01 80.8% 94.4%
3629868 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.52 46.0 2.82e-01 100.0% 69.7%
3399261 5.1.4.371 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz 0.52 38.0 2.61e-01 77.5% 44.6%
3225979 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 40.0 2.89e-01 82.5% 45.5%
3175498 5.1.4.332 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.52 41.0 2.96e-01 85.0% 70.4%
3809547 5.1.4.297 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.52 43.0 3.09e-01 90.8% 47.3%
4336238 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.52 39.0 4.17e-01 99.2% 95.0%
3205589 5.1.11.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Rrn6_beta-prop 0.52 42.0 2.95e-01 89.2% 66.6%
3413200 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 37.0 2.59e-01 75.8% 90.5%
4028247 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 44.0 3.15e-01 96.7% 68.3%
3469033 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 39.0 3.12e-01 80.8% 94.4%
3436009 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.51 41.0 3.22e-01 86.7% 76.5%
3517217 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.94e-01 87.5% 67.2%
3827487 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.96e-01 88.3% 69.3%
4001980 4099.1.1.21 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 0.50 40.0 4.05e-01 90.8% 85.8%
395916 883.1.1.6 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.50 34.0 3.28e-01 70.0% 88.4%
D6 medium residues 482-538
PDB