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IMGVR_UViG_3300017929_000306-3300017929-Ga0187849_10052924

Arc-Vir

IMGVR_UViG_3300017929_000306-3300017929-Ga0187849_10052924

Identity

Kingdom:
archaea

Quality

57.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-93_121-145
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 31.0 4.11e-01 72.0% 93.0%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 32.0 4.11e-01 99.2% 87.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 37.0 3.95e-01 90.7% 69.9%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 38.0 4.01e-01 96.6% 75.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.56 30.0 3.99e-01 96.6% 96.9%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.56 31.0 3.87e-01 91.5% 94.0%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 31.0 3.13e-01 100.0% 52.0%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.54 30.0 3.79e-01 94.1% 90.3%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.53 43.0 4.47e-01 87.3% 98.2%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 27.0 3.32e-01 92.4% 79.5%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 32.0 3.38e-01 90.7% 67.0%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 3.17e-01 100.0% 64.6%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.51 33.0 3.80e-01 90.7% 96.2%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 27.0 3.19e-01 71.2% 73.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.50 35.0 3.94e-01 99.2% 98.8%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 27.0 3.13e-01 100.0% 71.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586911 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 48.0 5.31e-01 82.2% 97.9%
2522820 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.40e-01 82.2% 91.7%
5052081 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 31.0 2.77e-01 70.3% 35.2%
4961487 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 36.0 3.72e-01 100.0% 63.5%
4203130 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 33.0 3.42e-01 94.1% 57.4%
4939372 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.55 32.0 3.97e-01 94.1% 97.1%
4976851 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.55 32.0 3.98e-01 94.9% 97.1%
4988064 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.53 31.0 3.83e-01 94.9% 97.1%
5076000 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.53 31.0 3.84e-01 94.1% 97.1%
3505840 1025.1.1.0 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain 0.53 29.0 3.31e-01 100.0% 70.0%
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.52 35.0 3.78e-01 96.6% 81.0%
3498294 148.1.3.40 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.52 40.0 4.26e-01 86.4% 92.4%
4955301 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.52 40.0 3.09e-01 83.9% 80.0%
3791287 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.52 29.0 3.32e-01 95.8% 71.1%
4192191 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.51 38.0 3.49e-01 78.8% 81.9%
4992927 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.51 30.0 3.71e-01 91.5% 97.1%
3593736 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.51 27.0 2.95e-01 99.2% 61.0%
3244940 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.50 27.0 3.11e-01 92.4% 70.0%
D2 medium residues 172-245
PDB