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IMGVR_UViG_3300017929_000347-3300017929-Ga0187849_100306319
Arc-VirIMGVR_UViG_3300017929_000347-3300017929-Ga0187849_100306319
Identity
- Kingdom:
- archaea
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-34_97-112
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08889.17 best | WbqC | 32.2 | 1.40e-07 | 86.0% | 17.4% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eyeA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.76 | 66.0 | 4.68e-01 | 100.0% | 78.4% |
| 1wyuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.74 | 65.0 | 4.09e-01 | 100.0% | 39.7% |
| 2afrA00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.71 | 60.0 | 3.97e-01 | 100.0% | 61.6% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.69 | 58.0 | 3.64e-01 | 100.0% | 42.7% |
| 1jflA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 59.0 | 4.61e-01 | 100.0% | 86.2% |
| 3bigA02 | 3.40.190.90 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.66 | 55.0 | 3.93e-01 | 100.0% | 78.2% |
| 3lwsA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.65 | 54.0 | 3.54e-01 | 100.0% | 46.2% |
| 3vaxA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.64 | 53.0 | 3.43e-01 | 100.0% | 42.2% |
| 1uwkA02 | 3.40.50.10730 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Urocanase like domains | 0.63 | 52.0 | 3.54e-01 | 100.0% | 88.9% |
| 3rojA02 | 3.40.190.90 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.62 | 51.0 | 3.67e-01 | 100.0% | 76.6% |
| 4w8hA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.62 | 46.0 | 3.66e-01 | 90.0% | 74.8% |
| 2zvbA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.62 | 52.0 | 3.94e-01 | 100.0% | 50.4% |
| 4ndoA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.61 | 50.0 | 3.34e-01 | 100.0% | 52.7% |
| 3p3vA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.61 | 50.0 | 3.66e-01 | 100.0% | 68.9% |
| 5cgaE00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 48.0 | 3.15e-01 | 96.0% | 54.1% |
| 6abiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 45.0 | 3.40e-01 | 82.0% | 44.4% |
| 3dmqA04 | 3.40.50.10810 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain | 0.61 | 49.0 | 3.14e-01 | 100.0% | 46.0% |
| 2bfwA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 46.0 | 3.27e-01 | 92.0% | 58.7% |
| 3ngxA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 49.0 | 3.83e-01 | 100.0% | 86.4% |
| 5kc8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 47.0 | 3.51e-01 | 100.0% | 72.2% |
| 3lteD00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 44.0 | 3.53e-01 | 90.0% | 74.0% |
| 3go6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 48.0 | 3.08e-01 | 100.0% | 39.0% |
| 1mrzA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 3.42e-01 | 98.0% | 59.5% |
| 1c3qA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 46.0 | 2.98e-01 | 96.0% | 53.9% |
| 4njmA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 45.0 | 3.37e-01 | 100.0% | 79.5% |
| 3mwbA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 47.0 | 4.03e-01 | 100.0% | 77.5% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.56 | 46.0 | 3.55e-01 | 96.0% | 63.2% |
| 5mmjb01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.56 | 43.0 | 3.39e-01 | 100.0% | 63.1% |
| 4bmdA02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.56 | 43.0 | 3.65e-01 | 94.0% | 93.9% |
| 1utbB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.24e-01 | 96.0% | 57.8% |
| 1s8nA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 3.13e-01 | 96.0% | 64.4% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 41.0 | 2.94e-01 | 96.0% | 84.3% |
| 4r75A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 36.0 | 2.60e-01 | 80.0% | 49.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4457401 | 2005.1.1.39 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › WbqC | 0.96 | 65.0 | 4.00e-01 | 70.0% | 31.7% |
| 3325628 | 4230.1.1.0 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain | 0.73 | 59.0 | 4.58e-01 | 90.0% | 54.5% |
| 3989685 | 7537.1.1.1 ↗ | a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb | 0.72 | 61.0 | 4.38e-01 | 100.0% | 77.4% |
| 297820 | 2007.7.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Precorrin-8X methylmutase CbiC/CobH › Precorrin-8X methylmutase CbiC/CobH › CbiC | 0.71 | 60.0 | 3.98e-01 | 100.0% | 61.3% |
| 4156887 | 2003.1.7.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom | 0.70 | 59.0 | 3.74e-01 | 100.0% | 62.1% |
| 4283589 | 2003.1.7.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom | 0.70 | 59.0 | 3.77e-01 | 100.0% | 59.2% |
| 3943591 | 7537.1.1.1 ↗ | a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb | 0.70 | 58.0 | 4.24e-01 | 100.0% | 77.4% |
| 2388851 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.70 | 58.0 | 4.21e-01 | 100.0% | 65.4% |
| 3514470 | 2003.1.7.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom | 0.69 | 58.0 | 3.82e-01 | 100.0% | 51.9% |
| 4861477 | 3016.1.1.8 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Beta_elim_lyase | 0.68 | 56.0 | 3.67e-01 | 100.0% | 50.4% |
| 4167926 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.66 | 53.0 | 3.76e-01 | 100.0% | 65.3% |
| 4485365 | 2007.25.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 | 0.66 | 47.0 | 4.00e-01 | 78.0% | 48.9% |
| 3512672 | 7587.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in glpX-like bacterial fructose-1,6-bisphosphatase › FBPase_glpX | 0.63 | 52.0 | 3.75e-01 | 100.0% | 79.4% |
| 3270529 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 45.0 | 3.14e-01 | 78.0% | 61.8% |
| 3970012 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.62 | 51.0 | 3.46e-01 | 100.0% | 89.0% |
| 3280107 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.61 | 50.0 | 3.54e-01 | 100.0% | 60.5% |
| 3388864 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.60 | 49.0 | 3.25e-01 | 100.0% | 31.2% |
| 3507044 | 7568.1.1.20 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PF29099 | 0.59 | 47.0 | 3.93e-01 | 96.0% | 53.0% |
| 4273731 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.59 | 47.0 | 3.10e-01 | 100.0% | 49.5% |
| 4986482 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.58 | 47.0 | 3.75e-01 | 100.0% | 86.7% |
| 4977968 | 2003.1.7.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom | 0.58 | 46.0 | 3.20e-01 | 100.0% | 76.7% |
| 5073319 | 7574.1.1.5 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C | 0.58 | 42.0 | 2.95e-01 | 82.0% | 43.2% |
| 4410573 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.58 | 48.0 | 3.55e-01 | 100.0% | 57.2% |
| 5008139 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.57 | 45.0 | 3.30e-01 | 100.0% | 82.2% |
| 5019894 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.56 | 47.0 | 3.35e-01 | 100.0% | 56.5% |
| 3614619 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.56 | 44.0 | 4.23e-01 | 92.0% | 80.0% |
| 3209291 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 43.0 | 2.67e-01 | 100.0% | 26.0% |
| 3946713 | 7523.1.1.5 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT | 0.55 | 45.0 | 4.01e-01 | 100.0% | 77.5% |
| 3955767 | 323.1.1.37 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding, Condensation | 0.55 | 39.0 | 2.10e-01 | 78.0% | 10.5% |
| 3583762 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.55 | 44.0 | 4.17e-01 | 96.0% | 100.0% |
| 4107309 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.54 | 45.0 | 2.98e-01 | 98.0% | 63.7% |
| 3404254 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 41.0 | 3.17e-01 | 100.0% | 60.7% |
D2
medium
residues 35-96
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08889.17 best | WbqC | 35.2 | 1.80e-08 | 56.5% | 15.1% |